MirGeneDB ID | Isc-Bantam-P9a |
Family name |
BANTAM (all species) |
Seed |
GAGAUCA |
Species |
Deer tick (Ixodes scapularis) |
MiRBase ID |
isc-bantam
|
Paralogues |
Isc-Bantam-P9b
|
Orthologues |
Aae-Bantam
Bge-Bantam
Bpl-Bantam
Cgi-Bantam
Cte-Bantam
Dan-Bantam
Dma-Bantam
Dme-Bantam
Dmo-Bantam
Dpu-Bantam
Dsi-Bantam
Dya-Bantam
Esc-Bantam
Hme-Bantam
Lan-Bantam
Lgi-Bantam
Npo-Bantam
Ovu-Bantam
Tca-Bantam
|
Node of Origin (locus) |
I. scapularis
|
Node of Origin (family) |
Protostomia
|
Genome context (IscaWI) |
DS616556: 1196-1256 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CGGCAUCUGCCGAAGAAACGCCAGACAAAACUGGUUUUCACAAUGAUCGUCCAGAUGGACCUGAAGUCUGAGAUCAUUGUGAAAGCUGAUUUUGUUGAUUCAGAGCUUCACGUCCACCGCC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CGGCAUCUGCCGAAGAAACGCCA--| CU GUC UGGAC
GACAAAA GGUUUUCACAAUGAUC CAGA \
UUGUUUU UCGAAAGUGUUACUAG GUCU C
CCGCCACCUGCACUUCGAGACUUAG^ AG A-- GAAGU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
Al |
Mi |
Mi |
Mi |
Sa |
Sa |
Sa |
Sa |
To |
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Star sequence |
Isc-Bantam-P9a_5p* |
mirBase accession | None |
Sequence |
0- CUGGUUUUCACAAUGAUCGUCCAGA -25
Get sequence
|
Mature sequence |
Isc-Bantam-P9a_3p |
mirBase accession | MIMAT0012679 |
Sequence |
38- UGAGAUCAUUGUGAAAGCUGAUU -61
Get sequence
|