| MirGeneDB ID | Bpl-Bantam |
|---|
| Family name |
BANTAM (all species) |
|---|
| Seed |
GAGAUCA |
|---|
| Species |
Rotifer (Brachionus plicatilis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Aae-Bantam
Asu-Bantam-o1
Asu-Bantam-o2
Asu-Bantam-o3
Bge-Bantam
Cbr-Bantam-P1a
Cbr-Bantam-P1b
Cbr-Bantam-P2
Cbr-Bantam-P3
Cbr-Bantam-P4
Cel-Bantam-P1
Cel-Bantam-P2
Cel-Bantam-P3
Cel-Bantam-P4
Cel-Bantam-P5a
Cel-Bantam-P5b
Cel-Bantam-P5c
Cgi-Bantam
Csc-Bantam-P16
Csc-Bantam-P17
Cte-Bantam
Dan-Bantam
Dma-Bantam
Dme-Bantam
Dmo-Bantam
Dpu-Bantam
Dsi-Bantam
Dya-Bantam
Efe-Bantam-P6
Efe-Bantam-P7
Efe-Bantam-P8
Esc-Bantam
Hme-Bantam
Isc-Bantam-P9a
Isc-Bantam-P9b
Lan-Bantam
Lgi-Bantam
Lpo-Bantam-P10
Lpo-Bantam-P11
Lpo-Bantam-P12
Lpo-Bantam-P13
Lpo-Bantam-P14
Lpo-Bantam-P15
Npo-Bantam
Ovu-Bantam
Sme-Bantam-P18
Sme-Bantam-P19
Sme-Bantam-P20
Tca-Bantam
|
|---|
| Node of Origin (locus) |
Protostomia
|
|---|
| Node of Origin (family) |
Protostomia
|
|---|
Genome context
(Bpl_ASM1027981) |
QEOQ01000508.1: 6576969-6577030 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AAAUGGUGGUCGACUGUGGCCCUAAAAUUUCAGUUUUCGCAAUAAUCAUUUCACAUUGUUAUAUAAUUAGUGAGAUCAUUGUGAAAACUGAUUAUUUAGCCGCCAAUAGACAUCGCAGAGUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AAAUGGUGGUCGACUGU- C-| AUU AAUC AUUGUUA
GGC CUAAA UCAGUUUUCGCAAU AUUUCAC \
CCG GAUUU AGUCAAAAGUGUUA UAGAGUG U
AUGAGACGCUACAGAUAA CC^ AUU C--- AUUAAUA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | UG at 5p(-14) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Bpl-Bantam_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CAGUUUUCGCAAUAAUCAUUUCACA -25
Get sequence
|
|---|
| Mature sequence |
Bpl-Bantam_3p |
| mirBase accession | None |
|---|
| Sequence |
40- UGAGAUCAUUGUGAAAACUGAU -62
Get sequence
|
|---|
