MirGeneDB ID | Lpo-Bantam-P10 |
Family name |
BANTAM (all species) |
Seed |
GAGAUCA |
Species |
Atlantic horseshoe crab (Limulus polyphemus) |
MiRBase ID |
|
Paralogues |
Lpo-Bantam-P11
Lpo-Bantam-P12
Lpo-Bantam-P13
Lpo-Bantam-P14
Lpo-Bantam-P15
|
Orthologues |
Aae-Bantam
Bge-Bantam
Bpl-Bantam
Cgi-Bantam
Cte-Bantam
Dan-Bantam
Dma-Bantam
Dme-Bantam
Dmo-Bantam
Dpu-Bantam
Dsi-Bantam
Dya-Bantam
Esc-Bantam
Hme-Bantam
Lan-Bantam
Lgi-Bantam
Npo-Bantam
Ovu-Bantam
Tca-Bantam
|
Node of Origin (locus) |
L. polyphemus
|
Node of Origin (family) |
Protostomia
|
Genome context (GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013668390.1: 57984-58044 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCCAGGAAAGCGGCUAUCCUGUAGACAAAACUGGUUUUCACAAUGAUUUGACAGAUGUGUUCGGUAUCUGAGAUCAUUGUGAAAGCUGAUUUUGUUGUCCUAUCAUCUCGCAGUUCACAAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UCCAGGAAAGCGGCUAUCCUGUA--| CU GA UGUGU
GACAAAA GGUUUUCACAAUGAUUU CAGA \
UUGUUUU UCGAAAGUGUUACUAGA GUCU U
AAACACUUGACGCUCUACUAUCCUG^ AG -- AUGGC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
|
|
Star sequence |
Lpo-Bantam-P10_5p* |
mirBase accession | None |
Sequence |
0- CUGGUUUUCACAAUGAUUUGACAGA -25
Get sequence
|
Mature sequence |
Lpo-Bantam-P10_3p |
mirBase accession | None |
Sequence |
38- UGAGAUCAUUGUGAAAGCUGAUU -61
Get sequence
|