MirGeneDB 2.1

MirGeneDB ID

Lpo-Bantam-P15

Family name BANTAM (all species)
Seed GAGAUCA
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Bantam-P10  Lpo-Bantam-P11  Lpo-Bantam-P12  Lpo-Bantam-P13  Lpo-Bantam-P14 
Orthologues Aae-Bantam  Bge-Bantam  Bpl-Bantam  Cgi-Bantam  Cte-Bantam  Dan-Bantam  Dma-Bantam  Dme-Bantam  Dmo-Bantam  Dpu-Bantam  Dsi-Bantam  Dya-Bantam  Esc-Bantam  Hme-Bantam  Lan-Bantam  Lgi-Bantam  Npo-Bantam  Ovu-Bantam  Tca-Bantam 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Protostomia
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)
NW_013674997.1: 13900-13959 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AGAAAGCCAAGACCACAGUUUUCGACAAAACUGGUUUUUACAGUGAUUUCCAGACAGAGUUAACAUCUGAGAUCAUUGUGAAAGCCGAUUUUGUUGUCUUGACCACCAUUACAACAUUAA
Get precursor sequence
Structure
        10        20          30        40        50          
AGAAAGCCAAGACCACAGUUUU--|       C                   C  ACAGAG 
                        CGACAAAA UGGUUUUUACAGUGAUUUC AG      \
                        GUUGUUUU GCCGAAAGUGUUACUAGAG UC      U
AAUUACAACAUUACCACCAGUUCU^       A                   -  UACAAU 
.       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Fe Fe Fe Ma Ma To
Star sequence

Lpo-Bantam-P15_5p* (predicted)

mirBase accessionNone
Sequence
0- CUGGUUUUUACAGUGAUUUCCAG -23
Get sequence
Mature sequence

Lpo-Bantam-P15_3p

mirBase accessionNone
Sequence
37- UGAGAUCAUUGUGAAAGCCGAUU -60
Get sequence