MirGeneDB 3.0
MirGeneDB ID

Pdu-Bantam-P25

Family name BANTAM (all species)
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues Pdu-Bantam-P26 
Orthologues Aae-Bantam  Aga-Bantam  Agr-Bantam  Bge-Bantam  Bko-Bantam  Bpl-Bantam  Cte-Bantam  Dan-Bantam  Dgr-Bantam  Dlo-Bantam  Dma-Bantam  Dme-Bantam  Dmo-Bantam  Dpu-Bantam  Dsi-Bantam  Dya-Bantam  Eba-Bantam  Esc-Bantam  Gpa-Bantam  Gsa-Bantam  Gsp-Bantam  Hme-Bantam  Hru-Bantam  Lan-Bantam  Lgi-Bantam  Lhy-Bantam  Llo-Bantam  Mgi-Bantam  Mom-Bantam  Nag-Bantam  Npo-Bantam  Ofu-Bantam  Ovu-Bantam  Pau-Bantam  Pcr-Bantam  Ple-Bantam  Pve-Bantam  Sma-Bantam  Sne-Bantam  Snu-Bantam  Tca-Bantam  Tur-Bantam  War-Bantam 
Node of Origin (locus) P. dumerilii
Node of Origin (family) Protostomia
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000002.1: 72665914-72665975 [-] Ensembl
Clustered miRNAs
(< 50kb from Bantam-P25)		 Bantam-P25 JAPTHN010000002.1: 72665914-72665975 [-] Ensembl
Bantam-P26 JAPTHN010000002.1: 72666495-72666557 [-] Ensembl
Seed GAGAUCA
Precursor
(pre-Mir +30nt flank)		 
CAUCGCAUCGUCAGCGAACUUUAGACGAAACUGGUUUUCACAUUGGUCUUCCAGAGUGAGUUUCUCGUCUGAGAUCAUUGUGAAAACUGAUUUUGUCGCCCCCCUCAUCUGUCAGUUCUCUC
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Structure
        10        20          30        40        50        60 
CAUCGCAUCGUCAGCGAACUUUA--|      CU          U      UC    GUGAG 
                         GACGAAA  GGUUUUCACA UGGUCU  CAGA     U
                         CUGUUUU  UCAAAAGUGU ACUAGA  GUCU     U
CUCUCUUGACUGUCUACUCCCCCCG^      AG          U      --    GCUCU 
120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
- +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Star sequence

Pdu-Bantam-P25_5p*
mirBase accessionNone
Sequence 
0- CUGGUUUUCACAUUGGUCUUCCAGA -25
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Mature sequence

Pdu-Bantam-P25_3p
mirBase accessionNone
Sequence 
39- UGAGAUCAUUGUGAAAACUGAUU -62
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