| MirGeneDB ID | Asu-Bantam-o1 |
|---|
| Family name |
BANTAM (all species) |
|---|
| Species |
Large roundworm (Ascaris suum) |
|---|
| MiRBase ID |
asu-mir-81a
|
|---|
| Paralogues |
Asu-Bantam-o2
Asu-Bantam-o3
|
|---|
| Orthologues |
Aae-Bantam
Aga-Bantam
Agr-Bantam
Bge-Bantam
Bko-Bantam
Bpl-Bantam
Cbr-Bantam-P1a
Cbr-Bantam-P1b
Cel-Bantam-P1
Cte-Bantam
Dan-Bantam
Dgr-Bantam
Dlo-Bantam
Dma-Bantam
Dme-Bantam
Dmo-Bantam
Dpu-Bantam
Dsi-Bantam
Dya-Bantam
Eba-Bantam
Esc-Bantam
Gpa-Bantam
Gsa-Bantam
Gsp-Bantam
Hme-Bantam
Hru-Bantam
Lan-Bantam
Lgi-Bantam
Lhy-Bantam
Llo-Bantam
Mgi-Bantam
Mom-Bantam
Nag-Bantam
Npo-Bantam
Ofu-Bantam
Ovu-Bantam
Pau-Bantam
Pcr-Bantam
Ple-Bantam
Pve-Bantam
Sma-Bantam
Sne-Bantam
Snu-Bantam
Tca-Bantam
Tur-Bantam
War-Bantam
|
|---|
| Node of Origin (locus) |
A.suum
|
|---|
| Node of Origin (family) |
Protostomia
|
|---|
Genome context
(ASU_PRJNA80881_plustraces) |
Scaffold406: 346015-346076 [+]
|
|---|
| Seed |
GAGAUCA |
|---|
Precursor
(pre-Mir +30nt flank) |
GUGUAAUUCAACGUGCACCGCACGGGCACUAGGCCUUCACUGUGAUCUGCAGAAUGCCUGUUAUACUGUCUGAGAUCAUUGUGAAAGCUAUUUGCCUUGCUUGUGGAUACACCGUCGACGUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GUGUAAUUCAACGUGCACC---| C CUA C U G AUGCCUG
GCA GGGCA GGC UUCAC GUGAUCU CAGA \
CGU UCCGU UCG AAGUG UACUAGA GUCU U
UUGCAGCUGCCACAUAGGUGUU^ - UUA A U - GUCAUAU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Ce |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
La |
Ov |
Se |
Sp |
Te |
Zy |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Asu-Bantam-o1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGGCCUUCACUGUGAUCUGCAGA -23
Get sequence
|
|---|
| Mature sequence |
Asu-Bantam-o1_3p |
| mirBase accession | MIMAT0021474 |
|---|
| Sequence |
40- UGAGAUCAUUGUGAAAGCUAUU -62
Get sequence
|
|---|
