MirGeneDB 3.0
MirGeneDB ID

Cbr-Bantam-P1a

Family name BANTAM (all species)
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-58a
Paralogues Cbr-Bantam-P1b  Cbr-Bantam-P2  Cbr-Bantam-P3  Cbr-Bantam-P4 
Orthologues Aae-Bantam  Aga-Bantam  Agr-Bantam  Asu-Bantam-o1  Bge-Bantam  Bko-Bantam  Bpl-Bantam  Cel-Bantam-P1  Cte-Bantam  Dan-Bantam  Dgr-Bantam  Dlo-Bantam  Dma-Bantam  Dme-Bantam  Dmo-Bantam  Dpu-Bantam  Dsi-Bantam  Dya-Bantam  Eba-Bantam  Esc-Bantam  Gpa-Bantam  Gsa-Bantam  Gsp-Bantam  Hme-Bantam  Hru-Bantam  Lan-Bantam  Lgi-Bantam  Lhy-Bantam  Llo-Bantam  Mgi-Bantam  Mom-Bantam  Nag-Bantam  Npo-Bantam  Ofu-Bantam  Ovu-Bantam  Pau-Bantam  Pcr-Bantam  Ple-Bantam  Pve-Bantam  Sma-Bantam  Sne-Bantam  Snu-Bantam  Tca-Bantam  Tur-Bantam  War-Bantam 
Node of Origin (locus) C. briggsae
Node of Origin (family) Protostomia
Genome context
(CB4)		 IV: 9605767-9605840 [-] Ensembl
Seed GAGAUCG
Precursor
(pre-Mir +30nt flank)		 
GCGAACCCGUUUGAUGCUCGCCAUAUCCAUUGCCCUACUAUUCGCAUCUCAUCACUCCAGUAUAUAUAUAUAUAUAUAAGGAUGAGAUCGUUCAGUACGGCAAUGGAAAGAGCUAAACGACGGUUGUUUGGCCU
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Structure
        10          20        30        40        50        60       
GCGAACCCGUUUGAUGCUC--| CAUA         C    AUU  C        ACUCCAGUAUAUA 
                     GC    UCCAUUGCC UACU   CG AUCUCAUC             \
                     CG    AGGUAACGG AUGA   GC UAGAGUAG             U
UCCGGUUUGUUGGCAGCAAAU^ AGAA         C    CUU  -        GAAUAUAUAUAUA 
  130       120       110       100        90         80        70
Deep sequencing
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CommentThere is a second Drosha cut +1 on both arms.
3' NTU No
MotifsNo
Tissue expression
- +
Ea Ma Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Yo Yo
Star sequence

Cbr-Bantam-P1a_5p*
mirBase accessionNone
Sequence 
0- UGCCCUACUAUUCGCAUCUCAUC -23
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Mature sequence

Cbr-Bantam-P1a_3p
mirBase accessionMIMAT0000478
Sequence 
52- UGAGAUCGUUCAGUACGGCAAU -74
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