MirGeneDB 3.0
MirGeneDB ID

Cbr-Bantam-P3

Family name BANTAM (all species)
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-81
Paralogues Cbr-Bantam-P1a  Cbr-Bantam-P1b  Cbr-Bantam-P2  Cbr-Bantam-P4 
Orthologues Aae-Bantam  Aga-Bantam  Agr-Bantam  Asu-Bantam-o3  Bge-Bantam  Bko-Bantam  Bpl-Bantam  Cel-Bantam-P3  Cte-Bantam  Dan-Bantam  Dgr-Bantam  Dlo-Bantam  Dma-Bantam  Dme-Bantam  Dmo-Bantam  Dpu-Bantam  Dsi-Bantam  Dya-Bantam  Eba-Bantam  Esc-Bantam  Gpa-Bantam  Gsa-Bantam  Gsp-Bantam  Hme-Bantam  Hru-Bantam  Lan-Bantam  Lgi-Bantam  Lhy-Bantam  Llo-Bantam  Mgi-Bantam  Mom-Bantam  Nag-Bantam  Npo-Bantam  Ofu-Bantam  Ovu-Bantam  Pau-Bantam  Pcr-Bantam  Ple-Bantam  Pve-Bantam  Sma-Bantam  Sne-Bantam  Snu-Bantam  Tca-Bantam  Tur-Bantam  War-Bantam 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Protostomia
Genome context
(CB4)		 X: 4359703-4359767 [-] Ensembl
Clustered miRNAs
(< 50kb from Bantam-P3)		 Bantam-P4 X: 4356782-4356845 [+] Ensembl
Bantam-P3 X: 4359703-4359767 [-] Ensembl
Seed GAGAUCA
Precursor
(pre-Mir +30nt flank)		 
UUAUUAUUCUAUGCCAUCGUGAUUAACGGUCGGUUUUCACCUUGAUCUGAGAGCAAUAACCAGAAUGCUUAUCUGAGAUCAUCGUGAAAGCUAGUUGUUACUUCACUCGGCUUUUUGUCUCAAAA
Get precursor sequence
Structure
        10         20         30        40        50        60  
UUAUUAUUCUAUGCCAUC-    U-|     UC         CU      G   GCAAUAACC 
                   GUGA  UAACGG  GGUUUUCAC  UGAUCU AGA         \
                   CACU  AUUGUU  UCGAAAGUG  ACUAGA UCU         A
AAAACUCUGUUUUUCGGCU    UC^     GA         CU      G   AUUCGUAAG 
   120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Ea Ma Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Yo Yo
Star sequence

Cbr-Bantam-P3_5p*
mirBase accessionNone
Sequence 
0- CGGUUUUCACCUUGAUCUGAGA -22
Get sequence
Mature sequence

Cbr-Bantam-P3_3p
mirBase accessionMIMAT0000488
Sequence 
43- UGAGAUCAUCGUGAAAGCUAGU -65
Get sequence