MirGeneDB 2.1

MirGeneDB ID

Cbr-Bantam-P3

Family name BANTAM (all species)
Seed GAGAUCA
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-81
Paralogues Cbr-Bantam-P1a  Cbr-Bantam-P1b  Cbr-Bantam-P2  Cbr-Bantam-P4 
Orthologues Aae-Bantam  Asu-Bantam-o3  Bge-Bantam  Bpl-Bantam  Cel-Bantam-P3  Cgi-Bantam  Cte-Bantam  Dan-Bantam  Dma-Bantam  Dme-Bantam  Dmo-Bantam  Dpu-Bantam  Dsi-Bantam  Dya-Bantam  Esc-Bantam  Hme-Bantam  Lan-Bantam  Lgi-Bantam  Npo-Bantam  Ovu-Bantam  Tca-Bantam 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Protostomia
Genome context
(CB4)
X: 4359703-4359767 [-] Ensembl
Clustered miRNAs
(< 50kb from Bantam-P3)
Bantam-P4 X: 4356782-4356845 [+] Ensembl
Bantam-P3 X: 4359703-4359767 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUAUUAUUCUAUGCCAUCGUGAUUAACGGUCGGUUUUCACCUUGAUCUGAGAGCAAUAACCAGAAUGCUUAUCUGAGAUCAUCGUGAAAGCUAGUUGUUACUUCACUCGGCUUUUUGUCUCAAAA
Get precursor sequence
Structure
        10         20         30        40        50        60  
UUAUUAUUCUAUGCCAUC-    U-|     UC         CU      G   GCAAUAACC 
                   GUGA  UAACGG  GGUUUUCAC  UGAUCU AGA         \
                   CACU  AUUGUU  UCGAAAGUG  ACUAGA UCU         A
AAAACUCUGUUUUUCGGCU    UC^     GA         CU      G   AUUCGUAAG 
   120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 Cb Ea Ma Yo
Star sequence

Cbr-Bantam-P3_5p*

mirBase accessionNone
Sequence
0- CGGUUUUCACCUUGAUCUGAGA -22
Get sequence
Mature sequence

Cbr-Bantam-P3_3p

mirBase accessionMIMAT0000488
Sequence
43- UGAGAUCAUCGUGAAAGCUAGU -65
Get sequence