MirGeneDB 3.0
102 microRNA genes with node of origin Caenorhabditis
Sort by genome coordinates Motifs
MirGeneDB ID ▲ MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) Iso­miR 3' NTU  UG  UGUG CNNC
Cel-Bantam-P1 cel-mir-58a BANTAM GAGAUCG MIMAT0015100 MIMAT0000030 chrIV 3233269 3233335 + Caenorhabditis Protostomia No 1
Cbr-Bantam-P2 cbr-mir-80 BANTAM GAGAUCA None MIMAT0000487 III 14440888 14440953 - Caenorhabditis Protostomia No
Cel-Bantam-P2 cel-mir-80 BANTAM GAGAUCA MIMAT0000052 MIMAT0000053 chrIII 8865285 8865349 - Caenorhabditis Protostomia No
Cbr-Bantam-P3 cbr-mir-81 BANTAM GAGAUCA None MIMAT0000488 X 4359703 4359767 - Caenorhabditis Protostomia No
Cel-Bantam-P3 cel-mir-81 BANTAM GAGAUCA MIMAT0015109 MIMAT0000054 chrX 2431096 2431159 + Caenorhabditis Protostomia No
Cbr-Bantam-P4 cbr-mir-82 BANTAM GAGAUCA None MIMAT0000489 X 4356782 4356845 + Caenorhabditis Protostomia No
Cel-Bantam-P4 cel-mir-82 BANTAM GAGAUCA MIMAT0020323 MIMAT0000055 chrX 2435273 2435333 - Caenorhabditis Protostomia No
Cbr-Lsy-6 cbr-lsy-6 LSY-6 UUUGUAU None MIMAT0000767 V 10397389 10397454 - Caenorhabditis Caenorhabditis No
Cel-Lsy-6 cel-lsy-6 LSY-6 UUUGUAU MIMAT0031896 MIMAT0000749 chrV 10647237 10647301 + Caenorhabditis Caenorhabditis No
Cbr-Let-7-P7 cbr-mir-241 LET-7 GAGGUAG MIMAT0000501 None V 14730289 14730352 + Caenorhabditis Bilateria No
Cel-Let-7-P7 cel-mir-241 LET-7 GAGGUAG MIMAT0000297 MIMAT0020335 chrV 14366203 14366268 - Caenorhabditis Bilateria No
Cbr-Let-7-P8 cbr-mir-48 LET-7 GAGGUAG MIMAT0000473 None V 14733147 14733209 + Caenorhabditis Bilateria No
Cel-Let-7-P8 cel-mir-48 LET-7 GAGGUAG MIMAT0000019 MIMAT0015098 chrV 14364435 14364494 - Caenorhabditis Bilateria No
Cbr-Mir-2-o3 cbr-mir-2 MIR-2 AUCACAG None MIMAT0029606 I 2714104 2714186 - Caenorhabditis Protostomia No
Cel-Mir-2-o3 cel-mir-2 MIR-2 AUCACAG MIMAT0020302 MIMAT0000004 chrI 9372783 9372846 - Caenorhabditis Protostomia No
Cbr-Mir-2-o4 cbr-mir-43 MIR-2 AUCACAG None MIMAT0000468 II 8891220 8891282 - Caenorhabditis Protostomia No
Cel-Mir-2-o4 cel-mir-43 MIR-2 AUCACAG MIMAT0020308 MIMAT0000014 chrII 11889930 11889992 + Caenorhabditis Protostomia No
Cbr-Mir-9-P14 cbr-mir-75 MIR-9 UAAAGCU None MIMAT0000484 X 4419753 4419815 - Caenorhabditis Bilateria No
Cel-Mir-9-P14 cel-mir-75 MIR-9 UAAAGCU MIMAT0015108 MIMAT0000047 chrX 2372475 2372534 + Caenorhabditis Bilateria No
Cbr-Mir-9-P15 cbr-mir-79 MIR-9 UAAAGCU None MIMAT0000486 I 1849428 1849490 + Caenorhabditis Bilateria No
Cel-Mir-9-P15 cel-mir-79 MIR-9 UAAAGCU MIMAT0020322 MIMAT0000051 chrI 9332964 9333027 + Caenorhabditis Bilateria No
Cbr-Mir-9-P16 cbr-mir-244 MIR-9 CUUUGGU MIMAT0000502 None I 3161588 3161646 + Caenorhabditis Bilateria No
Cel-Mir-9-P16 cel-mir-244 MIR-9 CUUUGGU MIMAT0000300 MIMAT0015118 chrI 4684336 4684399 - Caenorhabditis Bilateria No
Cbr-Mir-10-P3m cbr-lin-4 MIR-10 CCCUGAG MIMAT0000464 None II 9816759 9816819 - Caenorhabditis Eumetazoa No 1
Cel-Mir-10-P3m cel-lin-4 MIR-10 CCCUGAG MIMAT0000002 MIMAT0015092 chrII 5902269 5902329 + Caenorhabditis Eumetazoa No 1 1
Cbr-Mir-10-P3n cbr-mir-237 MIR-10 CCCUGAG MIMAT0011479 MIMAT0011480 X 16760725 16760783 - Caenorhabditis Eumetazoa No
Cel-Mir-10-P3n cel-mir-237 MIR-10 CCCUGAG MIMAT0000292 MIMAT0020333 chrX 8154099 8154157 + Caenorhabditis Eumetazoa No
Cbr-Mir-52-P1 cbr-mir-52 MIR-52 ACCCGUA MIMAT0000476 None IV 7363031 7363092 + Caenorhabditis Caenorhabditis No
Cel-Mir-52-P1 cel-mir-52 MIR-52 ACCCGUA MIMAT0000023 MIMAT0020311 chrIV 14034024 14034086 + Caenorhabditis Caenorhabditis No
Cel-Mir-52-P2 cel-mir-53 MIR-52 ACCCGUA MIMAT0000024 MIMAT0020312 chrIV 11027614 11027676 - Caenorhabditis Caenorhabditis No
Cel-Mir-54-P1 cel-mir-54 MIR-54 ACCCGUA MIMAT0020773 MIMAT0000025 chrX 13145011 13145076 - Caenorhabditis Chromadorea No
Cbr-Mir-54-P2 cbr-mir-55 MIR-54 ACCCGUA None MIMAT0001310 X 16963478 16963540 - Caenorhabditis Chromadorea No
Cel-Mir-54-P2 cel-mir-55 MIR-54 ACCCGUA MIMAT0020313 MIMAT0000026 chrX 13144842 13144902 - Caenorhabditis Chromadorea No
Cbr-Mir-54-P3 cbr-mir-56 MIR-54 ACCCGUA MIMAT0011475 MIMAT0011476 X 16963349 16963415 - Caenorhabditis Chromadorea No
Cel-Mir-54-P3 cel-mir-56 MIR-54 ACCCGUA MIMAT0000027 MIMAT0000028 chrX 13144706 13144770 - Caenorhabditis Chromadorea No
Cbr-Mir-62 cbr-mir-62 MIR-62 GAUAUGU None MIMAT0001309 X 14298386 14298443 - Caenorhabditis Caenorhabditis No
Cel-Mir-62 cel-mir-62 MIR-62 GAUAUGU None MIMAT0000034 chrX 12692608 12692665 + Caenorhabditis Caenorhabditis No
Cbr-Mir-70 cbr-mir-70 MIR-70 AAUACGU None MIMAT0001300 V 12360178 12360240 - Caenorhabditis Caenorhabditis No
Cel-Mir-70 cel-mir-70 MIR-70 AAUACGU MIMAT0020317 MIMAT0000042 chrV 6665552 6665611 - Caenorhabditis Caenorhabditis No
Cel-Mir-73-P1 cel-mir-73 MIR-73 GGCAAGA MIMAT0020319 MIMAT0000045 chrX 2368787 2368848 + Caenorhabditis Caenorhabditis No 1
Cel-Mir-73-P2 cel-mir-74 MIR-73 GGCAAGA MIMAT0020320 MIMAT0000046 chrX 2369062 2369124 + Caenorhabditis Caenorhabditis No
Cbr-Mir-85 cbr-mir-85 MIR-85 ACAAAGU None MIMAT0000490 II 3822205 3822268 - Caenorhabditis Caenorhabditis No
Cel-Mir-85 cel-mir-85 MIR-85 ACAAAGU MIMAT0020324 MIMAT0000058 chrII 8393575 8393640 + Caenorhabditis Caenorhabditis No
Cbr-Mir-87-o1 cbr-mir-87 MIR-87 UGAGCAA None MIMAT0000492 V 8974034 8974098 + Caenorhabditis Protostomia No 1
Cel-Mir-87-o1 cel-mir-87 MIR-87 UGAGCAA MIMAT0020325 MIMAT0000060 chrV 12038700 12038765 - Caenorhabditis Protostomia No
Cbr-Mir-87-o2 cbr-mir-233 MIR-87 UGAGCAA None MIMAT0000498 X 1737042 1737108 + Caenorhabditis Protostomia No
Cel-Mir-87-o2 cel-mir-233 MIR-87 UGAGCAA MIMAT0020329 MIMAT0000288 chrX 12078602 12078666 - Caenorhabditis Protostomia No
Cel-Mir-90 cel-mir-90 MIR-90 GAUAUGU MIMAT0020326 MIMAT0000061 chrIII 8874001 8874069 - Caenorhabditis Caenorhabditis No
Cbr-Mir-230 cbr-mir-230 MIR-230 CUUGGUC None MIMAT0000496 X 11132721 11132785 + Caenorhabditis Caenorhabditis No
Cel-Mir-230 cel-mir-230 MIR-230 CUUGGUC MIMAT0015113 MIMAT0000285 chrX 5803908 5803974 + Caenorhabditis Caenorhabditis No
Cbr-Mir-231 cbr-mir-231 MIR-231 AAGCUCG None MIMAT0001293 III 11907645 11907704 + Caenorhabditis Caenorhabditis No
Cel-Mir-231 cel-mir-231 MIR-231 AAGCUCG MIMAT0020328 MIMAT0000286 chrIII 7545072 7545138 - Caenorhabditis Caenorhabditis No
Cbr-Mir-238 cbr-mir-238 MIR-238 UUGUACU None MIMAT0011465 III 14445088 14445154 - Caenorhabditis Caenorhabditis No 1
Cel-Mir-238 cel-mir-238 MIR-238 UUGUACU MIMAT0015114 MIMAT0000293 chrIII 8867343 8867410 - Caenorhabditis Caenorhabditis No
Cbr-Mir-246 cbr-mir-246 MIR-246 UACAUGU None MIMAT0001296 IV 7431821 7431881 - Caenorhabditis Caenorhabditis No
Cel-Mir-246 cel-mir-246 MIR-246 UACAUGU MIMAT0020337 MIMAT0000302 chrIV 10940152 10940215 + Caenorhabditis Caenorhabditis No
Cbr-Mir-248 V cbr-mir-248 MIR-248 UACACGU None MIMAT0000504 X 4543339 4543400 + Caenorhabditis Caenorhabditis 2 No 1
Cel-Mir-248 V cel-mir-248 MIR-248 UACACGU None MIMAT0000304 chrX 2262388 2262448 - Caenorhabditis Caenorhabditis 2 No
Cbr-Mir-249 cbr-mir-249 MIR-249 CACAGGA None MIMAT0001305 X 8056761 8056824 - Caenorhabditis Caenorhabditis No
Cel-Mir-249 cel-mir-249 MIR-249 CACAGGA MIMAT0020338 MIMAT0000305 chrX 3006454 3006518 - Caenorhabditis Caenorhabditis No
Cbr-Mir-253 cbr-mir-253 MIR-253 UAGUAGG MIMAT0001299 None V 11596505 11596569 - Caenorhabditis Caenorhabditis No
Cel-Mir-253 cel-mir-253 MIR-253 UAGUAGG MIMAT0000309 MIMAT0004215 chrV 5780532 5780596 - Caenorhabditis Caenorhabditis No
Cbr-Mir-254 cbr-mir-254 MIR-254 ACAGAAG None MIMAT0001307 X 5253102 5253162 + Caenorhabditis Caenorhabditis No 1
Cel-Mir-254 cel-mir-254 MIR-254 GCAAAUC MIMAT0031891 MIMAT0000310 chrX 11333550 11333612 - Caenorhabditis Caenorhabditis No 1
Cbr-Mir-255 cbr-mir-255 MIR-255 UAAGAAA None MIMAT0004297 V 11365786 11365844 + Caenorhabditis Caenorhabditis No 1
Cel-Mir-255 cel-mir-255 MIR-255 AACUGAA MIMAT0020341 MIMAT0004216 chrV 5440663 5440721 + Caenorhabditis Caenorhabditis No
Cbr-Mir-279-P10 cbr-mir-44 MIR-279 GACUAGA None MIMAT0000469 II 8891068 8891135 - Caenorhabditis Protostomia No
Cel-Mir-279-P10 cel-mir-44 MIR-279 GACUAGA MIMAT0020771 MIMAT0000015 chrII 11890038 11890103 + Caenorhabditis Protostomia No
Cel-Mir-279-P11 cel-mir-45 MIR-279 GACUAGA MIMAT0020772 MIMAT0000016 chrII 11880959 11881025 - Caenorhabditis Protostomia No
Cbr-Mir-279-P12 cbr-mir-61 MIR-279 GACUAGA None MIMAT0001302 V 9339608 9339664 - Caenorhabditis Protostomia No
Cel-Mir-279-P12 cel-mir-61 MIR-279 GACUAGA MIMAT0015103 MIMAT0000033 chrV 11770076 11770132 - Caenorhabditis Protostomia No 1
Cbr-Mir-279-P13 cbr-mir-247 MIR-279 GAGUUCA None MIMAT0029605 X 10093683 10093743 + Caenorhabditis Protostomia No
Cel-Mir-279-P13 cel-mir-247 MIR-279 GACUAGA MIMAT0015119 MIMAT0000303 chrX 4756991 4757052 + Caenorhabditis Protostomia No
Cbr-Mir-281-P3 cbr-mir-46 MIR-281 GUCAUGG None MIMAT0000471 III 5569432 5569492 - Caenorhabditis Nephrozoa No
Cel-Mir-281-P3 cel-mir-46 MIR-281 GUCAUGG MIMAT0015096 MIMAT0000017 chrIII 13660529 13660596 + Caenorhabditis Nephrozoa No
Cbr-Mir-281-P4 cbr-mir-47 MIR-281 GUCAUGG None MIMAT0000472 X 19747150 19747211 + Caenorhabditis Nephrozoa No
Cel-Mir-281-P4 cel-mir-47 MIR-281 GUCAUGG MIMAT0015097 MIMAT0000018 chrX 13921268 13921331 + Caenorhabditis Nephrozoa No
Cbr-Mir-305-P1 cbr-mir-239a MIR-305 UUGUACU MIMAT0001304 None X 15212591 15212656 + Caenorhabditis Cryptovermes No
Cel-Mir-305-P1 cel-mir-239a MIR-305 UUGUACU MIMAT0000294 MIMAT0020334 chrX 11792460 11792524 + Caenorhabditis Cryptovermes No
Cbr-Mir-305-P2 cbr-mir-239b MIR-305 UUGUACU MIMAT0001308 None X 15211418 15211472 - Caenorhabditis Cryptovermes Unknown
Cel-Mir-305-P2 cel-mir-239b MIR-305 UUGUACU MIMAT0000295 MIMAT0015115 chrX 11791321 11791384 - Caenorhabditis Cryptovermes No
Cbr-Mir-355 cbr-mir-355 MIR-355 UUGUUUU MIMAT0001319 None II 7347353 7347411 - Caenorhabditis Caenorhabditis Unknown 1
Cel-Mir-355 cel-mir-355 MIR-355 UUGUUUU MIMAT0000697 MIMAT0031895 chrII 11833564 11833623 - Caenorhabditis Caenorhabditis No
Cel-Mir-357 cel-mir-357 MIR-357 AAUGCCA MIMAT0020343 MIMAT0000699 chrV 8580565 8580627 - Caenorhabditis Caenorhabditis No
Cbr-Mir-357-P1 cbr-mir-357-1 MIR-357 AAUGCCA None MIMAT0001298 V 1198348 1198413 + Caenorhabditis Caenorhabditis No
Cbr-Mir-357-P2 cbr-mir-357-2 MIR-357 AAUGCCA None MIMAT0001298 III 7290304 7290369 - Caenorhabditis Caenorhabditis No
Cbr-Mir-358 V cbr-mir-358 MIR-358 UUGGUAU None MIMAT0001301 V 1197889 1197957 + Caenorhabditis Caenorhabditis 2 No
Cel-Mir-358 V cel-mir-358 MIR-358 UUGGUAU MIMAT0015120 MIMAT0000700 chrV 8580880 8580948 - Caenorhabditis Caenorhabditis 2 No
Cbr-Mir-392 cbr-mir-392 MIR-392 UCAUCGA None MIMAT0004299 X 19329050 19329110 + Caenorhabditis Caenorhabditis No
Cel-Mir-392 V cel-mir-392 MIR-392 UCAUCGA MIMAT0020344 MIMAT0000768 chrX 13597261 13597319 + Caenorhabditis Caenorhabditis 2 No
Cbr-Mir-784 cbr-mir-784 MIR-784 GGCACAA MIMAT0004285 None X 13857300 13857362 - Caenorhabditis Caenorhabditis No
Cel-Mir-784 cel-mir-784 MIR-784 GGCACAA MIMAT0004219 MIMAT0020347 chrX 8074934 8074996 - Caenorhabditis Caenorhabditis No
Cel-Mir-785 cel-mir-785 MIR-785 AAGUGAA MIMAT0032015 MIMAT0004220 chrX 3004687 3004747 + Caenorhabditis Caenorhabditis No
Cbr-Mir-787 cbr-mir-787 MIR-787 AAGCUCG None MIMAT0004288 X 5308354 5308415 - Caenorhabditis Caenorhabditis No
Cel-Mir-787 cel-mir-787 MIR-787 AAGCUCG MIMAT0020348 MIMAT0004222 chrX 11294724 11294783 + Caenorhabditis Caenorhabditis No 1
Cbr-Mir-788 V cbr-mir-788 MIR-788 AAUGGGA MIMAT0004289 None X 16382877 16382943 + Caenorhabditis Caenorhabditis 2 No
Cel-Mir-788 V cel-mir-788 MIR-788 GAAAUGG MIMAT0004223 MIMAT0015240 chrX 8485301 8485362 - Caenorhabditis Caenorhabditis 2 No 1
Cbr-Mir-789 cbr-mir-789 MIR-789 ACGUGGU None MIMAT0004291 V 3561079 3561142 + Caenorhabditis Caenorhabditis No
Cbr-Mir-1817 cbr-mir-1817 MIR-1817 AGCCAAU MIMAT0011486 None I 11435405 11435486 - Caenorhabditis Caenorhabditis No
Cel-Mir-1817 cel-mir-1817 MIR-1817 AGCCAAU MIMAT0006584 None chrI 10869388 10869454 - Caenorhabditis Caenorhabditis No
Cbr-Mir-4813 cbr-mir-4813 MIR-4813 GGCUUUC None MIMAT0029916 III 6986657 6986716 + Caenorhabditis Caenorhabditis No
Cel-Mir-4813 cel-mir-4813 MIR-4813 GACUAUC MIMAT0020000 MIMAT0020001 chrIII 4571648 4571707 + Caenorhabditis Caenorhabditis No

(red - mature/co-mature, blue - star)

Download sequences for: precursor | 5p | 3p | mature | star | mature/star | loop | extend_pre | all