Mir-281-P4

MirGeneDB ID

Cbr-Mir-281-P4

Family name

MIR-281 (all species)

Species

Roundworm (Caenorhabditis briggsae)

MiRBase ID

cbr-mir-47

Paralogues

Cbr-Mir-281-P3

Orthologues

Aae-Mir-281 Aga-Mir-281 Agr-Mir-281 Asu-Mir-281 Bfl-Mir-281 Bge-Mir-281 Bko-Mir-281 Bla-Mir-281 Bpl-Mir-281 Cel-Mir-281-P4 Cin-Mir-281 Csc-Mir-281 Cte-Mir-281 Dgr-Mir-281 Dlo-Mir-281 Dma-Mir-281 Dpu-Mir-281 Eba-Mir-281 Ebu-Mir-281 Egr-Mir-281 Esc-Mir-281 Gsa-Mir-281 Hme-Mir-281 Hru-Mir-281 Isc-Mir-281 Lhy-Mir-281 Llo-Mir-281 Mgi-Mir-281 Mom-Mir-281 Npo-Mir-281 Obi-Mir-281 Ofu-Mir-281 Ovu-Mir-281 Pca-Mir-281 Pcr-Mir-281 Pdu-Mir-281 Pfl-Mir-281 Rph-Mir-281 Sko-Mir-281 Sma-Mir-281 Sme-Mir-281 Snu-Mir-281 Sto-Mir-281 Tca-Mir-281 Tur-Mir-281 War-Mir-281

Node of Origin (locus)

Caenorhabditis

Node of Origin (family)

Nephrozoa

Genome context
(CB4)

X: 19747150-19747211 [+] Ensembl

Seed

GUCAUGG

Precursor
(pre-Mir +30nt flank)

UAAGUUUAAAUUAAUAGCUGAGGAAGACUGAAGGGAGCUUUCUUUUGACAGUUCGAUUUCGAACUCUUACUGUCAUGGAGGCGCUCUCUUCAGGUGAACUCUGGCUCUUUUUUUUUGUUUUU

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Structure

        10          20        30         40        50        60
UAAGUUUAAAUUAAUAGCU--   GAAGA           -|    UU       UCGAUUU 
                     GAG     CUGAAGGGAGC UUUCU  UGACAGU       C
                     CUC     GACUUCUCUCG GGAGG  ACUGUCA       G
UUUUUGUUUUUUUUUCUCGGU   AAGUG           C^    U-       UUCUCAA 
120       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Ea	Ma	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Yo	Yo

Star sequence

Cbr-Mir-281-P4_5p*

mirBase accession

None

Sequence

0- AAGGGAGCUUUCUUUUGACAGU -22

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Mature sequence

Cbr-Mir-281-P4_3p

mirBase accession

MIMAT0000472

Sequence

40- UGUCAUGGAGGCGCUCUCUUCA -62

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