MirGeneDB ID | Isc-Mir-281 |
Family name |
MIR-281 (all species) |
Seed |
AGAGAGC |
Species |
Deer tick (Ixodes scapularis) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aae-Mir-281
Asu-Mir-281
Bfl-Mir-281
Bge-Mir-281
Cbr-Mir-281-P3
Cbr-Mir-281-P4
Cel-Mir-281-P3
Cel-Mir-281-P4
Cgi-Mir-281
Cin-Mir-281
Cte-Mir-281
Dan-Mir-281-P1-v1
Dan-Mir-281-P1-v2
Dan-Mir-281-P2-v1
Dan-Mir-281-P2-v2
Dme-Mir-281-P1-v1
Dme-Mir-281-P1-v2
Dme-Mir-281-P2-v1
Dme-Mir-281-P2-v2
Dmo-Mir-281-P1-v1
Dmo-Mir-281-P1-v2
Dmo-Mir-281-P2-v1
Dmo-Mir-281-P2-v2
Dpu-Mir-281
Efe-Mir-281-P5
Efe-Mir-281-P6
Efe-Mir-281-P7
Hme-Mir-281
Lan-Mir-281-P9
Lan-Mir-281-P10
Lgi-Mir-281-P8
Lgi-Mir-281-P9
Pfl-Mir-281
Sko-Mir-281
Sto-Mir-281
Tca-Mir-281
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
|
Genome context (IscaWI) |
1716747454: 337-400 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAGCGACCAGGCGAGGCGGCCUGCUCCCGAAAGAGAGCAAUCCGUGGACAGUGUGUAUGUCCGAAAUGGAACUGUCAUGGAGUCGCUCUCUUUCGGGCGGGGCUCGCGGUACGCUAGCGAAAAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAGCGACCAGGCGAGGC---| GCU AA- G GUGUAUGU
GGCCU CCCGAAAGAGAGC UCCGUG ACAGU C
UCGGG GGGCUUUCUCUCG AGGUAC UGUCA C
AAAAAGCGAUCGCAUGGCGC^ GC- CUG - AGGUAAAG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | Not in assembly but in trace archive. |
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
|
Al |
Mi |
Mi |
Mi |
Sa |
Sa |
Sa |
Sa |
To |
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Mature sequence |
Isc-Mir-281_5p |
MirBase accession | None |
Sequence |
0- AAGAGAGCAAUCCGUGGACAGU -22
Get sequence
|
Star sequence |
Isc-Mir-281_3p* |
MirBase accession | None |
Sequence |
42- UGUCAUGGAGUCGCUCUCUUUC -64
Get sequence
|