Mir-281

MirGeneDB ID

Isc-Mir-281

Family name

MIR-281 (all species)

Species

Deer tick (Ixodes scapularis)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-281 Aga-Mir-281 Agr-Mir-281 Asu-Mir-281 Ava-Mir-281-P24a Ava-Mir-281-P24b Ava-Mir-281-P25a Ava-Mir-281-P25b Bfl-Mir-281 Bge-Mir-281 Bko-Mir-281 Bla-Mir-281 Bpl-Mir-281 Cbr-Mir-281-P3 Cbr-Mir-281-P4 Cel-Mir-281-P3 Cel-Mir-281-P4 Cin-Mir-281 Cmi-Mir-281-v1 Csc-Mir-281 Cte-Mir-281 Dan-Mir-281-P1-v1 Dan-Mir-281-P2 Dgr-Mir-281 Dlo-Mir-281 Dma-Mir-281 Dme-Mir-281-P1-v1 Dme-Mir-281-P2-v1 Dmo-Mir-281-P1-v1 Dmo-Mir-281-P2-v1 Dpu-Mir-281 Dsi-Mir-281-P1-v1 Dsi-Mir-281-P2-v1 Dya-Mir-281-P1-v1 Dya-Mir-281-P2-v1 Eba-Mir-281 Ebu-Mir-281 Efe-Mir-281-P5 Efe-Mir-281-P6 Efe-Mir-281-P7 Egr-Mir-281 Esc-Mir-281 Gpa-Mir-281-P1-v1 Gpa-Mir-281-P2-v1 Gsa-Mir-281 Hme-Mir-281 Hru-Mir-281 Lan-Mir-281-P10 Lan-Mir-281-P11 Lgi-Mir-281-P8 Lgi-Mir-281-P9 Lhy-Mir-281 Llo-Mir-281 Lpo-Mir-281-P14 Lpo-Mir-281-P15 Lpo-Mir-281-P16 Lpo-Mir-281-P17 Lpo-Mir-281-P18 Mgi-Mir-281 Mom-Mir-281 Npo-Mir-281 Obi-Mir-281 Ofu-Mir-281 Ovu-Mir-281 Pau-Mir-281-P22 Pau-Mir-281-P23 Pca-Mir-281 Pcr-Mir-281 Pdu-Mir-281 Pfl-Mir-281 Pma-Mir-281-P12 Pma-Mir-281-P13 Pve-Mir-281-P19 Pve-Mir-281-P20 Pve-Mir-281-P21a Pve-Mir-281-P21b Rph-Mir-281 Sko-Mir-281 Sma-Mir-281 Sme-Mir-281 Snu-Mir-281 Sto-Mir-281 Tca-Mir-281 Tur-Mir-281 War-Mir-281

Node of Origin (locus)

Nephrozoa

Node of Origin (family)

Nephrozoa

Genome context
(GCF_016920785.2_ASM1692078v2_ISC)

NW_024609835.1: 168853379-168853442 [+] Ensembl

Seed

AGAGAGC

Precursor
(pre-Mir +30nt flank)

AAGCGACCAGGCGAGGCGGCCUGCUCCCGAAAGAGAGCAAUCCGUGGACAGUGUGUAUGUCCGAAAUGGAACUGUCAUGGAGUCGCUCUCUUUCGGGCGGGGCUCGCGGUACGCUAGCGAAAAA

Get precursor sequence

Structure

        10           20        30        40         50        60 
AAGCGACCAGGCGAGGC---|    GCU             AA-      G     GUGUAUGU 
                    GGCCU   CCCGAAAGAGAGC   UCCGUG ACAGU        C
                    UCGGG   GGGCUUUCUCUCG   AGGUAC UGUCA        C
AAAAAGCGAUCGCAUGGCGC^    GC-             CUG      -     AGGUAAAG 
  120       110       100         90        80         70

Deep sequencing

Go to detailed chart

Comment

Not in assembly but in trace archive.

3' NTU

Motifs

UGUG in loop

Tissue expression

Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Sa	Sa	To

Mature sequence

Isc-Mir-281_5p

mirBase accession

None

Sequence

0- AAGAGAGCAAUCCGUGGACAGU -22

Get sequence

Star sequence

Isc-Mir-281_3p*

mirBase accession

None

Sequence

42- UGUCAUGGAGUCGCUCUCUUUC -64

Get sequence