MirGeneDB 2.1
MirGeneDB ID

Bfl-Mir-281

Family name MIR-281 (all species)
Seed GUCAUGG
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-281
Paralogues
Orthologues Aae-Mir-281  Asu-Mir-281  Bge-Mir-281  Bla-Mir-281  Bpl-Mir-281  Cbr-Mir-281-P3  Cbr-Mir-281-P4  Cel-Mir-281-P3  Cel-Mir-281-P4  Cgi-Mir-281  Cin-Mir-281  Cmi-Mir-281-v1  Cmi-Mir-281-v2  Csc-Mir-281  Cte-Mir-281  Dan-Mir-281-P1-v1  Dan-Mir-281-P1-v2  Dan-Mir-281-P2-v1  Dan-Mir-281-P2-v2  Dma-Mir-281  Dme-Mir-281-P1-v1  Dme-Mir-281-P1-v2  Dme-Mir-281-P2-v1  Dme-Mir-281-P2-v2  Dmo-Mir-281-P1-v1  Dmo-Mir-281-P1-v2  Dmo-Mir-281-P2-v1  Dmo-Mir-281-P2-v2  Dpu-Mir-281  Dsi-Mir-281-P1-v1  Dsi-Mir-281-P1-v2  Dsi-Mir-281-P2-v1  Dsi-Mir-281-P2-v2  Dya-Mir-281-P1-v1  Dya-Mir-281-P1-v2  Dya-Mir-281-P2-v1  Dya-Mir-281-P2-v2  Ebu-Mir-281  Efe-Mir-281-P5  Efe-Mir-281-P6  Efe-Mir-281-P7  Esc-Mir-281  Hme-Mir-281  Isc-Mir-281  Lan-Mir-281-P9  Lan-Mir-281-P10  Lgi-Mir-281-P8  Lgi-Mir-281-P9  Lpo-Mir-281-P13  Lpo-Mir-281-P14  Lpo-Mir-281-P15  Lpo-Mir-281-P16  Lpo-Mir-281-P17  Npo-Mir-281  Obi-Mir-281  Ovu-Mir-281  Pfl-Mir-281  Pma-Mir-281-P11  Pma-Mir-281-P12  Sko-Mir-281  Sme-Mir-281  Sto-Mir-281  Tca-Mir-281 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)		 NC_049994.1: 17378029-17378088 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CGGCAGUGUUCCAUCUCCCUCUGUGCGGAGGGGAGAGCCGUUCCGUGACUGUGGAACCUCGGGAACACUGUCAUGGAGUUGCUCUCUUUUCCGCGCGAGGACAAAACAACAACAAACAAA
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Structure
        10           20        30        40        50         
CGGCAGUGUUCCAUCUC---|   U                CG         U  GGAACC 
                    CCUC GUGCGGAGGGGAGAGC  UUCCGUGAC GU      U
                    GGAG CGCGCCUUUUCUCUCG  GAGGUACUG CA      C
AAACAAACAACAACAAAACA^   -                UU         U  CAAGGG 
.       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Bfl-Mir-281_5p*
mirBase accessionNone
Sequence 
0- GGGAGAGCCGUUCCGUGACUGU -22
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Mature sequence

Bfl-Mir-281_3p
mirBase accessionMIMAT0009500
Sequence 
38- UGUCAUGGAGUUGCUCUCUUUU -60
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