MirGeneDB 3.0
MirGeneDB ID

Gpa-Mir-281-P1

Family name MIR-281 (all species)
Species Tsetse fly (Glossina pallidipes)
MiRBase ID
Paralogues Gpa-Mir-281-P2-v1 
Orthologues Aae-Mir-281  Aga-Mir-281  Agr-Mir-281  Asu-Mir-281  Bfl-Mir-281  Bge-Mir-281  Bko-Mir-281  Bla-Mir-281  Bpl-Mir-281  Cin-Mir-281  Csc-Mir-281  Cte-Mir-281  Dan-Mir-281-P1-v1  Dgr-Mir-281  Dlo-Mir-281  Dma-Mir-281  Dme-Mir-281-P1-v1  Dmo-Mir-281-P1-v1  Dpu-Mir-281  Dsi-Mir-281-P1-v1  Dya-Mir-281-P1-v1  Eba-Mir-281  Ebu-Mir-281  Egr-Mir-281  Esc-Mir-281  Gsa-Mir-281  Hme-Mir-281  Hru-Mir-281  Isc-Mir-281  Lhy-Mir-281  Llo-Mir-281  Mgi-Mir-281  Mom-Mir-281  Npo-Mir-281  Obi-Mir-281  Ofu-Mir-281  Ovu-Mir-281  Pca-Mir-281  Pcr-Mir-281  Pdu-Mir-281  Pfl-Mir-281  Rph-Mir-281  Sko-Mir-281  Sma-Mir-281  Sme-Mir-281  Snu-Mir-281  Sto-Mir-281  Tca-Mir-281  Tur-Mir-281  War-Mir-281 
Node of Origin (locus) Glossinidae + Drosophilidae
Node of Origin (family) Nephrozoa
Genome context
(GpalI1)		 Scaffold293: 205475-205541 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-281-P1-v1)		 Mir-281-P1-v1 Scaffold293: 205475-205541 [+] Ensembl
Mir-281-P1-v2 Scaffold293: 205476-205540 [+] Ensembl
Mir-281-P2-v1 Scaffold293: 205739-205817 [+] Ensembl
Mir-281-P2-v2 Scaffold293: 205740-205816 [+] Ensembl
Variant

Gpa-Mir-281-P1-v1
Seed AAGAGAG
Precursor
(pre-Mir +30nt flank)		 
UUCUAUUAUAUGCCUAGCGAAUAAGUAAAUAAAGAGAGCUGUCCGUCGACAGUCCAGUUCAGACAUAUUAAUACUGUCAUGGAAUUGCUCUCUUUGUAUGAUAUUCGAUUAUCGUCACGUAAACUUU
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Structure
        10           20        30        40         50        60   
UUCUAUUAUAUGCCUAG---|     AG  A           UG-     C      CCAGUUCAG 
                    CGAAUA  UA AUAAAGAGAGC   UCCGU GACAGU         \
                    GCUUAU  GU UGUUUCUCUCG   AGGUA CUGUCA         A
UUUCAAAUGCACUGCUAUUA^     A-  A           UUA     -      UAAUUAUAC 
     120       110        100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To To To To To To To To To To To To To To To To To To To To To
Mature sequence

Gpa-Mir-281-P1-v1_5p
mirBase accessionNone
Sequence 
0- AAAGAGAGCUGUCCGUCGACAGU -23
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Co-mature sequence

Gpa-Mir-281-P1-v1_3p
mirBase accessionNone
Sequence 
44- UGUCAUGGAAUUGCUCUCUUUGU -67
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Variant

Gpa-Mir-281-P1-v2
Seed AGAGAGC
Precursor
(pre-Mir +30nt flank)		 
UCUAUUAUAUGCCUAGCGAAUAAGUAAAUAAAGAGAGCUGUCCGUCGACAGUCCAGUUCAGACAUAUUAAUACUGUCAUGGAAUUGCUCUCUUUGUAUGAUAUUCGAUUAUCGUCACGUAAACUU
Get precursor sequence
Structure
        10           20        30        40         50        60  
UCUAUUAUAUGCCUAGC---|    AG  A           UG-     C      CCAGUUCAG 
                    GAAUA  UA AUAAAGAGAGC   UCCGU GACAGU         \
                    CUUAU  GU UGUUUCUCUCG   AGGUA CUGUCA         A
UUCAAAUGCACUGCUAUUAG^    A-  A           UUA     -      UAAUUAUAC 
   120       110       100         90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To To To To To To To To To To To To To To To To To To To To To
Mature sequence

Gpa-Mir-281-P1-v2_5p
mirBase accessionNone
Sequence 
0- AAGAGAGCUGUCCGUCGACAGUC -23
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Star sequence

Gpa-Mir-281-P1-v2_3p*
mirBase accessionNone
Sequence 
42- CUGUCAUGGAAUUGCUCUCUUUG -65
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