MirGeneDB 3.0
MirGeneDB ID

Dan-Mir-281-P1

Family name MIR-281 (all species)
Species Fruit fly (Drosophila ananassae)
MiRBase ID dan-mir-281-1
Paralogues Dan-Mir-281-P2 
Orthologues Aae-Mir-281  Aga-Mir-281  Agr-Mir-281  Asu-Mir-281  Bfl-Mir-281  Bge-Mir-281  Bko-Mir-281  Bla-Mir-281  Bpl-Mir-281  Cin-Mir-281  Csc-Mir-281  Cte-Mir-281  Dgr-Mir-281  Dlo-Mir-281  Dma-Mir-281  Dme-Mir-281-P1-v1  Dmo-Mir-281-P1-v1  Dpu-Mir-281  Dsi-Mir-281-P1-v1  Dya-Mir-281-P1-v1  Eba-Mir-281  Ebu-Mir-281  Egr-Mir-281  Esc-Mir-281  Gpa-Mir-281-P1-v1  Gsa-Mir-281  Hme-Mir-281  Hru-Mir-281  Isc-Mir-281  Lhy-Mir-281  Llo-Mir-281  Mgi-Mir-281  Mom-Mir-281  Npo-Mir-281  Obi-Mir-281  Ofu-Mir-281  Ovu-Mir-281  Pca-Mir-281  Pcr-Mir-281  Pdu-Mir-281  Pfl-Mir-281  Rph-Mir-281  Sko-Mir-281  Sma-Mir-281  Sme-Mir-281  Snu-Mir-281  Sto-Mir-281  Tca-Mir-281  Tur-Mir-281  War-Mir-281 
Node of Origin (locus) Drosophila
Node of Origin (family) Nephrozoa
Genome context
(Dana_caf1)		 scaffold_13266: 2568766-2568828 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-281-P1-v1)		 Mir-281-P1-v1 scaffold_13266: 2568766-2568828 [+] Ensembl
Mir-281-P1-v2 scaffold_13266: 2568767-2568827 [+] Ensembl
Mir-281-P2 scaffold_13266: 2568952-2569020 [+] Ensembl
Mir-988 scaffold_13266: 2579731-2579788 [+] Ensembl
Variant

Dan-Mir-281-P1-v1
Seed AAGAGAG
Precursor
(pre-Mir +30nt flank)		 
CUAGACUAUCUCGAAUGCGAAUACGUGAAUAAAGAGAGCUGUCCGUCGACAGUCCAGAUACCUAUAACACUGUCAUGGAAUUGCUCUCUUUGUAUAAUAUUCGACGCUUCGCUCCGAUCACUA
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Structure
        10           20        30        40         50        60 
CUAGACUAUCUCGAAUG---|     CG  A           UG-     C      CCAGAUA 
                    CGAAUA  UG AUAAAGAGAGC   UCCGU GACAGU       \
                    GCUUAU  AU UGUUUCUCUCG   AGGUA CUGUCA       C
AUCACUAGCCUCGCUUCGCA^     A-  A           UUA     -      CAAUAUC 
 120       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Fe
Mature sequence

Dan-Mir-281-P1-v1_5p
mirBase accessionMIMAT0008428
Sequence 
0- AAAGAGAGCUGUCCGUCGACAGU -23
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Star sequence

Dan-Mir-281-P1-v1_3p*
mirBase accessionMIMAT0008429
Sequence 
40- UGUCAUGGAAUUGCUCUCUUUGU -63
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Variant

Dan-Mir-281-P1-v2
Seed UGUCAUG
Precursor
(pre-Mir +30nt flank)		 
UAGACUAUCUCGAAUGCGAAUACGUGAAUAAAGAGAGCUGUCCGUCGACAGUCCAGAUACCUAUAACACUGUCAUGGAAUUGCUCUCUUUGUAUAAUAUUCGACGCUUCGCUCCGAUCACU
Get precursor sequence
Structure
        10           20        30        40         50          
UAGACUAUCUCGAAUGC---|    CG  A           UG-     C      CCAGAUA 
                    GAAUA  UG AUAAAGAGAGC   UCCGU GACAGU       \
                    CUUAU  AU UGUUUCUCUCG   AGGUA CUGUCA       C
UCACUAGCCUCGCUUCGCAG^    A-  A           UUA     -      CAAUAUC 
 .       110       100         90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Fe
Star sequence

Dan-Mir-281-P1-v2_5p*
mirBase accessionMIMAT0008428
Sequence 
0- AAGAGAGCUGUCCGUCGACAGUC -23
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Mature sequence

Dan-Mir-281-P1-v2_3p
mirBase accessionMIMAT0008429
Sequence 
38- CUGUCAUGGAAUUGCUCUCUUUG -61
Get sequence