MirGeneDB 3.0
MirGeneDB ID

Dmo-Mir-281-P1

Family name MIR-281 (all species)
Species Fruit fly (Drosophila mojavensis)
MiRBase ID dmo-mir-281-1
Paralogues Dmo-Mir-281-P2-v1 
Orthologues Aae-Mir-281  Aga-Mir-281  Agr-Mir-281  Asu-Mir-281  Bfl-Mir-281  Bge-Mir-281  Bko-Mir-281  Bla-Mir-281  Bpl-Mir-281  Cin-Mir-281  Csc-Mir-281  Cte-Mir-281  Dan-Mir-281-P1-v1  Dgr-Mir-281  Dlo-Mir-281  Dma-Mir-281  Dme-Mir-281-P1-v1  Dpu-Mir-281  Dsi-Mir-281-P1-v1  Dya-Mir-281-P1-v1  Eba-Mir-281  Ebu-Mir-281  Egr-Mir-281  Esc-Mir-281  Gpa-Mir-281-P1-v1  Gsa-Mir-281  Hme-Mir-281  Hru-Mir-281  Isc-Mir-281  Lhy-Mir-281  Llo-Mir-281  Mgi-Mir-281  Mom-Mir-281  Npo-Mir-281  Obi-Mir-281  Ofu-Mir-281  Ovu-Mir-281  Pca-Mir-281  Pcr-Mir-281  Pdu-Mir-281  Pfl-Mir-281  Rph-Mir-281  Sko-Mir-281  Sma-Mir-281  Sme-Mir-281  Snu-Mir-281  Sto-Mir-281  Tca-Mir-281  Tur-Mir-281  War-Mir-281 
Node of Origin (locus) Drosophila
Node of Origin (family) Nephrozoa
Genome context
(Dmoj_caf1)		 scaffold_6496: 6376244-6376308 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-281-P1-v1)		 Mir-988 scaffold_6496: 6364119-6364177 [-] Ensembl
Mir-281-P2-v1 scaffold_6496: 6376080-6376147 [-] Ensembl
Mir-281-P2-v2 scaffold_6496: 6376080-6376147 [-] Ensembl
Mir-281-P1-v1 scaffold_6496: 6376244-6376308 [-] Ensembl
Mir-281-P1-v2 scaffold_6496: 6376245-6376307 [-] Ensembl
Variant

Dmo-Mir-281-P1-v1
Seed GUCAUGG
Precursor
(pre-Mir +30nt flank)		 
AAAUCGUAGCGAAAAUGCGAAUAAGUGAAUAAAGAGAGCUGUCCGUCGACAGUCCAGUAAAGAUUGUAAAACUGUCAUGGAAUUGCUCUCUUUGUAUGAUAUUCGACGUUGCCCAAACUAACCCC
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Structure
        10           20        30        40         50        60  
AAAUCGUAGCGAAAAUG---|     AGUGA           UG-     C      CCAGUAAA 
                    CGAAUA     AUAAAGAGAGC   UCCGU GACAGU        \
                    GCUUAU     UGUUUCUCUCG   AGGUA CUGUCA        G
CCCCAAUCAAACCCGUUGCA^     AGUA-           UUA     -      AAAUGUUA 
   120       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Em Fe Ma Ma
Star sequence

Dmo-Mir-281-P1-v1_5p*
mirBase accessionMIMAT0008641
Sequence 
0- AAAGAGAGCUGUCCGUCGACAGU -23
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Mature sequence

Dmo-Mir-281-P1-v1_3p
mirBase accessionMIMAT0008642
Sequence 
42- UGUCAUGGAAUUGCUCUCUUUGU -65
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Variant

Dmo-Mir-281-P1-v2
Seed UGUCAUG
Precursor
(pre-Mir +30nt flank)		 
AAUCGUAGCGAAAAUGCGAAUAAGUGAAUAAAGAGAGCUGUCCGUCGACAGUCCAGUAAAGAUUGUAAAACUGUCAUGGAAUUGCUCUCUUUGUAUGAUAUUCGACGUUGCCCAAACUAACCC
Get precursor sequence
Structure
        10           20        30        40         50        60 
AAUCGUAGCGAAAAUGC---|    AGUGA           UG-     C      CCAGUAAA 
                    GAAUA     AUAAAGAGAGC   UCCGU GACAGU        \
                    CUUAU     UGUUUCUCUCG   AGGUA CUGUCA        G
CCCAAUCAAACCCGUUGCAG^    AGUA-           UUA     -      AAAUGUUA 
 120       110       100         90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Em Fe Ma Ma
Star sequence

Dmo-Mir-281-P1-v2_5p*
mirBase accessionMIMAT0008641
Sequence 
0- AAGAGAGCUGUCCGUCGACAGUC -23
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Mature sequence

Dmo-Mir-281-P1-v2_3p
mirBase accessionMIMAT0008642
Sequence 
40- CUGUCAUGGAAUUGCUCUCUUUG -63
Get sequence