MirGeneDB 3.0
MirGeneDB ID

Bge-Mir-281

Family name MIR-281 (all species)
Species Cockroach (Blattella germanica)
MiRBase ID
Paralogues
Orthologues Aae-Mir-281  Aga-Mir-281  Agr-Mir-281  Asu-Mir-281  Ava-Mir-281-P24a  Ava-Mir-281-P24b  Ava-Mir-281-P25a  Ava-Mir-281-P25b  Bfl-Mir-281  Bko-Mir-281  Bla-Mir-281  Bpl-Mir-281  Cbr-Mir-281-P3  Cbr-Mir-281-P4  Cel-Mir-281-P3  Cel-Mir-281-P4  Cin-Mir-281  Cmi-Mir-281-v1  Csc-Mir-281  Cte-Mir-281  Dan-Mir-281-P1-v1  Dan-Mir-281-P2  Dgr-Mir-281  Dlo-Mir-281  Dma-Mir-281  Dme-Mir-281-P1-v1  Dme-Mir-281-P2-v1  Dmo-Mir-281-P1-v1  Dmo-Mir-281-P2-v1  Dpu-Mir-281  Dsi-Mir-281-P1-v1  Dsi-Mir-281-P2-v1  Dya-Mir-281-P1-v1  Dya-Mir-281-P2-v1  Eba-Mir-281  Ebu-Mir-281  Efe-Mir-281-P5  Efe-Mir-281-P6  Efe-Mir-281-P7  Egr-Mir-281  Esc-Mir-281  Gpa-Mir-281-P1-v1  Gpa-Mir-281-P2-v1  Gsa-Mir-281  Hme-Mir-281  Hru-Mir-281  Isc-Mir-281  Lan-Mir-281-P10  Lan-Mir-281-P11  Lgi-Mir-281-P8  Lgi-Mir-281-P9  Lhy-Mir-281  Llo-Mir-281  Lpo-Mir-281-P14  Lpo-Mir-281-P15  Lpo-Mir-281-P16  Lpo-Mir-281-P17  Lpo-Mir-281-P18  Mgi-Mir-281  Mom-Mir-281  Npo-Mir-281  Obi-Mir-281  Ofu-Mir-281  Ovu-Mir-281  Pau-Mir-281-P22  Pau-Mir-281-P23  Pca-Mir-281  Pcr-Mir-281  Pdu-Mir-281  Pfl-Mir-281  Pma-Mir-281-P12  Pma-Mir-281-P13  Pve-Mir-281-P19  Pve-Mir-281-P20  Pve-Mir-281-P21a  Pve-Mir-281-P21b  Rph-Mir-281  Sko-Mir-281  Sma-Mir-281  Sme-Mir-281  Snu-Mir-281  Sto-Mir-281  Tca-Mir-281  Tur-Mir-281  War-Mir-281 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(Bger_2.0)		 KZ615391.1: 22996-23052 [-] Ensembl
Seed AGAGAGC
Precursor
(pre-Mir +30nt flank)		 
UUGACUGCGUUUGGGUCGGUCCGCACUAUCAAGAGAGCUAUCCGUCGACAGUAUUGUUUAUAAACUGUCAUGGAGUUGCUCUCUUUAUGGACGGGCUGCAUUGCGACCUCCUCCGAG
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Structure
        10           20        30        40         50        
UUGACUGCGUUUGGGUC---|     CA    C        UA-     C      AUUGU 
                    GGUCCG  CUAU AAGAGAGC   UCCGU GACAGU     \
                    UCGGGC  GGUA UUCUCUCG   AGGUA CUGUCA     U
GAGCCUCCUCCAGCGUUACG^     A-    U        UUG     -      AAUAU 
     110       100         90        80        70         60
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ad Co Co Di Di Eg Eg Em Em Em Em Em Em Em Em Em Em Ny Ny Ny Ny Ny Ny Ny Ny Ov
Mature sequence

Bge-Mir-281_5p
mirBase accessionNone
Sequence 
0- AAGAGAGCUAUCCGUCGACAGU -22
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Star sequence

Bge-Mir-281_3p*
mirBase accessionNone
Sequence 
35- UGUCAUGGAGUUGCUCUCUUUA -57
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