MirGeneDB 3.0
MirGeneDB ID

Ava-Mir-281-P24a

Family name MIR-281 (all species)
Species Bdelloid rotifer (Adineta vaga)
MiRBase ID
Paralogues Ava-Mir-281-P24b  Ava-Mir-281-P25a  Ava-Mir-281-P25b 
Orthologues Aae-Mir-281  Aga-Mir-281  Agr-Mir-281  Asu-Mir-281  Bfl-Mir-281  Bge-Mir-281  Bko-Mir-281  Bla-Mir-281  Bpl-Mir-281  Cin-Mir-281  Csc-Mir-281  Cte-Mir-281  Dgr-Mir-281  Dlo-Mir-281  Dma-Mir-281  Dpu-Mir-281  Eba-Mir-281  Ebu-Mir-281  Egr-Mir-281  Esc-Mir-281  Gsa-Mir-281  Hme-Mir-281  Hru-Mir-281  Isc-Mir-281  Lhy-Mir-281  Llo-Mir-281  Mgi-Mir-281  Mom-Mir-281  Npo-Mir-281  Obi-Mir-281  Ofu-Mir-281  Ovu-Mir-281  Pca-Mir-281  Pcr-Mir-281  Pdu-Mir-281  Pfl-Mir-281  Rph-Mir-281  Sko-Mir-281  Sma-Mir-281  Sme-Mir-281  Snu-Mir-281  Sto-Mir-281  Tca-Mir-281  Tur-Mir-281  War-Mir-281 
Node of Origin (locus) A. vaga
Node of Origin (family) Nephrozoa
Genome context
(GCA_021613535.1_ASM2161353v1_AVA)		 CP075497.1: 5448016-5448080 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-281-P24a)		 Mir-281-P25a CP075497.1: 5447849-5447910 [-] Ensembl
Mir-281-P24a CP075497.1: 5448016-5448080 [-] Ensembl
Seed UGUCAUG
Precursor
(pre-Mir +30nt flank)		 
UAUACAAUGAAAGGUUUUCUAAAGUAAAGGAGAGAGCUCUUCUUGAUAAUUAGAACAGAUAUAAUAGACAAAUUGUCAUGGGGAUUGCUCUCUUCUUUCUUCUUUCAAUAUCGUCGAUGUUUAGU
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Structure
        10        20           30          40        50        60 
UAUACAAUGAAAGGUUUUCUA---   U            --|    U        AGAACAGAU 
                        AAG AAAGGAGAGAGC  UCUUC UGAUAAUU         \
                        UUC UUUCUUCUCUCG  AGGGG ACUGUUAA         A
UGAUUUGUAGCUGCUAUAACUUUC   -            UU^    U        ACAGAUAAU 
   120       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To To
Star sequence

Ava-Mir-281-P24a_5p*
mirBase accessionNone
Sequence 
0- AGAGAGCUCUUCUUGAUAAUU -21
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Mature sequence

Ava-Mir-281-P24a_3p
mirBase accessionNone
Sequence 
42- UUGUCAUGGGGAUUGCUCUCUUC -65
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