MirGeneDB 2.1
MirGeneDB ID

Tca-Mir-281

Family name MIR-281 (all species)
Seed AGAGAGC
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-281
Paralogues
Orthologues Aae-Mir-281  Asu-Mir-281  Bfl-Mir-281  Bge-Mir-281  Bla-Mir-281  Bpl-Mir-281  Cbr-Mir-281-P3  Cbr-Mir-281-P4  Cel-Mir-281-P3  Cel-Mir-281-P4  Cgi-Mir-281  Cin-Mir-281  Cmi-Mir-281-v1  Cmi-Mir-281-v2  Csc-Mir-281  Cte-Mir-281  Dan-Mir-281-P1-v1  Dan-Mir-281-P1-v2  Dan-Mir-281-P2-v1  Dan-Mir-281-P2-v2  Dma-Mir-281  Dme-Mir-281-P1-v1  Dme-Mir-281-P1-v2  Dme-Mir-281-P2-v1  Dme-Mir-281-P2-v2  Dmo-Mir-281-P1-v1  Dmo-Mir-281-P1-v2  Dmo-Mir-281-P2-v1  Dmo-Mir-281-P2-v2  Dpu-Mir-281  Dsi-Mir-281-P1-v1  Dsi-Mir-281-P1-v2  Dsi-Mir-281-P2-v1  Dsi-Mir-281-P2-v2  Dya-Mir-281-P1-v1  Dya-Mir-281-P1-v2  Dya-Mir-281-P2-v1  Dya-Mir-281-P2-v2  Ebu-Mir-281  Efe-Mir-281-P5  Efe-Mir-281-P6  Efe-Mir-281-P7  Esc-Mir-281  Hme-Mir-281  Isc-Mir-281  Lan-Mir-281-P9  Lan-Mir-281-P10  Lgi-Mir-281-P8  Lgi-Mir-281-P9  Lpo-Mir-281-P13  Lpo-Mir-281-P14  Lpo-Mir-281-P15  Lpo-Mir-281-P16  Lpo-Mir-281-P17  Npo-Mir-281  Obi-Mir-281  Ovu-Mir-281  Pfl-Mir-281  Pma-Mir-281-P11  Pma-Mir-281-P12  Sko-Mir-281  Sme-Mir-281  Sto-Mir-281 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Tcas5.2)		 LG7: 203928-203983 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AUCAUGGGAUUGUUGUGCAAUUCGAAAAUGAAGAGAGCUAUCCGUCGACAGUAUAUAAUUUACACUGUCAUGGAGUUGCUCUCUUUAUGAACGAAUUCAAAAACAGCGAGGGAGUA
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Structure
        10         20        30        40         50        
AUCAUGGGAUUGUUGUGC-      AAA           UA-|    C      AUAUA 
                   AAUUCG   AUGAAGAGAGC   UCCGU GACAGU     \
                   UUAAGC   UAUUUCUCUCG   AGGUA CUGUCA     A
AUGAGGGAGCGACAAAAAC      AAG           UUG^    -      CAUUU 
    110       100        90        80        70         60
Deep sequencing
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CommentThere are Dicer cuts -1 and -2.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Mature sequence

Tca-Mir-281_5p
mirBase accessionMIMAT0008384
Sequence 
0- AAGAGAGCUAUCCGUCGACAGUA -23
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Star sequence

Tca-Mir-281_3p*
mirBase accessionMIMAT0008385
Sequence 
34- CUGUCAUGGAGUUGCUCUCUUU -56
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