MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-281

Family name MIR-281 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues
Orthologues Aae-Mir-281  Aga-Mir-281  Agr-Mir-281  Asu-Mir-281  Bfl-Mir-281  Bge-Mir-281  Bko-Mir-281  Bla-Mir-281  Bpl-Mir-281  Cin-Mir-281  Csc-Mir-281  Cte-Mir-281  Dgr-Mir-281  Dlo-Mir-281  Dma-Mir-281  Dpu-Mir-281  Eba-Mir-281  Ebu-Mir-281  Egr-Mir-281  Esc-Mir-281  Gsa-Mir-281  Hme-Mir-281  Hru-Mir-281  Isc-Mir-281  Lhy-Mir-281  Llo-Mir-281  Mgi-Mir-281  Mom-Mir-281  Npo-Mir-281  Obi-Mir-281  Ofu-Mir-281  Ovu-Mir-281  Pca-Mir-281  Pcr-Mir-281  Pdu-Mir-281  Pfl-Mir-281  Rph-Mir-281  Sko-Mir-281  Sma-Mir-281  Sme-Mir-281  Snu-Mir-281  Sto-Mir-281  Tca-Mir-281  Tur-Mir-281  War-Mir-281 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635926.1: 3116003-3116062 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-281-v1)		 Mir-281-v1 KI635926.1: 3116003-3116062 [+] UCSC Ensembl
Mir-281-v2 KI635926.1: 3116003-3116062 [+] UCSC Ensembl
Variant

Cmi-Mir-281-v1
Seed GUCAUGG
Precursor
(pre-Mir +30nt flank)		 
GAGUAGACAUCCUUCAUGCUGAUGGUGCCUAGGGGAGCAGCACUUUUGACAUGAAAUAUCUUUAAACUUGUCAUGGAGUUGCUCUCUUGAAUACCAUCUAUUGCAGCCGUCUGUAUUCCU
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Structure
        10        20          30        40        50          
GAGUAGACAUCCUUCAUGCU--|      CC            A  UU     UGAAAUAU 
                      GAUGGUG  UAGGGGAGCAGC CU  UGACA        \
                      CUACCAU  GUUCUCUCGUUG GG  ACUGU        C
UCCUUAUGUCUGCCGACGUUAU^      AA            A  U-     UCAAAUUU 
.       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-281-v1_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGGGGAGCAGCACUUUUGACAUG -23
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Mature sequence

Cmi-Mir-281-v1_3p
mirBase accessionNone
Sequence 
38- UGUCAUGGAGUUGCUCUCUUGA -60
Get sequence
Variant

Cmi-Mir-281-v2
Seed UGUCAUG
Precursor
(pre-Mir +30nt flank)		 
GAGUAGACAUCCUUCAUGCUGAUGGUGCCUAGGGGAGCAGCACUUUUGACAUGAAAUAUCUUUAAACUUGUCAUGGAGUUGCUCUCUUGAAUACCAUCUAUUGCAGCCGUCUGUAUUCCU
Get precursor sequence
Structure
        10        20          30        40        50          
GAGUAGACAUCCUUCAUGCU--|      CC            A  UU     UGAAAUAU 
                      GAUGGUG  UAGGGGAGCAGC CU  UGACA        \
                      CUACCAU  GUUCUCUCGUUG GG  ACUGU        C
UCCUUAUGUCUGCCGACGUUAU^      AA            A  U-     UCAAAUUU 
.       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-281-v2_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGGGGAGCAGCACUUUUGACAUGA -24
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Mature sequence

Cmi-Mir-281-v2_3p
mirBase accessionNone
Sequence 
37- UUGUCAUGGAGUUGCUCUCUUGA -60
Get sequence