MirGeneDB 3.0
93 Glossina pallidipes microRNA genes
Sort by genome coordinates Motifs Tissue expression
- +
MirGeneDB ID ▲ MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) Iso­miR 3' NTU  UG  UGUG CNNC To To To To To To To To To To To To To To To To To To To To To
Gpa-Bantam None BANTAM GAGAUCA None None Scaffold4 3165913 3165971 - Protostomia Protostomia No
Gpa-Iab-4 None IAB-4 CGUAUAC None None Scaffold177 289202 289258 - Arthropoda Arthropoda No 1 1
Gpa-Let-7 None LET-7 GAGGUAG None None Scaffold60 1061874 1061941 + Bilateria Bilateria No 1
Gpa-Mir-1 None MIR-1 GGAAUGU None None Scaffold39 433990 434050 + Bilateria Bilateria No 1
Gpa-Mir-2-P1 V None MIR-2 CACAGCC None None Scaffold379 74466 74531 - Arthropoda Protostomia 2 No
Gpa-Mir-2-P2a None MIR-2 AUCACAG None None Scaffold379 73449 73516 - Neoptera Protostomia No
Gpa-Mir-2-P2b None MIR-2 AUCACAG None None Scaffold6 536660 536722 + Neoptera Protostomia No 1 1
Gpa-Mir-2-P3a None MIR-2 AUCACAG None None Scaffold73 688954 689018 - Glossinidae + Drosophilidae Protostomia No
Gpa-Mir-2-P3b None MIR-2 AUCACAG None None Scaffold18 2343730 2343802 - Glossinidae + Drosophilidae Protostomia Yes
Gpa-Mir-2-P4a V None MIR-2 AUCACAG None None Scaffold18 2343517 2343607 - Glossinidae + Drosophilidae Protostomia 2 No
Gpa-Mir-2-P4b V None MIR-2 AUCACAG None None Scaffold18 2343308 2343367 - Glossinidae + Drosophilidae Protostomia 2 No
Gpa-Mir-2-P5 V None MIR-2 AAGGAAC None None Scaffold26 90896 90954 + Pancrustacea Protostomia 2 No 1
Gpa-Mir-2-P6 None MIR-2 AUCACAG None None Scaffold26 93729 93811 + Glossinidae + Drosophilidae Protostomia No 1
Gpa-Mir-2-P7 None MIR-2 AUCACAG None None Scaffold391 37678 37806 - Neoptera Protostomia No 1
Gpa-Mir-2-P8 None MIR-2 ACAGUAU None None Scaffold249 70399 70463 - Aparaglossata Protostomia Unknown 1 1
Gpa-Mir-2-P9 None MIR-2 UAAGGAA None None Scaffold132 422743 422809 + Glossinidae + Drosophilidae Protostomia No
Gpa-Mir-3 None MIR-3 CACUGGA None None Scaffold26 89648 89709 + Pancrustacea Pancrustacea No 1
Gpa-Mir-7 None MIR-7 GGAAGAC None None Scaffold88 1014372 1014433 - Bilateria Bilateria No 1
Gpa-Mir-8 None MIR-8 AAUACUG None None Scaffold240 175492 175555 + Nephrozoa Nephrozoa No 1
Gpa-Mir-9-P10 None MIR-9 CUUUGGU None None Scaffold27 1664994 1665054 - Pancrustacea Bilateria No 1 1
Gpa-Mir-9-P11 None MIR-9 CUUUGGU None None Scaffold60 384436 384498 - Neoptera Bilateria Unknown 1
Gpa-Mir-9-P12 V None MIR-9 AAAGCUA None None Scaffold60 382326 382387 - Neoptera Bilateria 2 No 1 1
Gpa-Mir-9-P13 None MIR-9 CUUUGGU None None Scaffold60 382083 382145 - Neoptera Bilateria No 1
Gpa-Mir-10-P1 None MIR-10 CCCUGUA None None JMRQ01006282 198124 198183 - Bilateria Eumetazoa No 1
Gpa-Mir-10-P2 None MIR-10 ACCCGUA None None Scaffold60 1061480 1061540 + Bilateria Eumetazoa No
Gpa-Mir-10-P3 None MIR-10 CCCUGAG None None Scaffold60 1062704 1062763 + Bilateria Eumetazoa No
Gpa-Mir-10-P4 None MIR-10 AAGCUCG None None JMRQ01006282 139879 139971 + Protostomia Eumetazoa No 1
Gpa-Mir-12 None MIR-12 GAGUAUU None None Scaffold19 1474288 1474372 + Protostomia Protostomia No 1 1
Gpa-Mir-14 None MIR-14 CAGUCUU None None Scaffold360 74590 74661 - Neoptera Neoptera No 1
Gpa-Mir-22-P2 None MIR-22 AGCUGCC None None Scaffold338 26389 26451 + Bilateria Bilateria No 1
Gpa-Mir-29-P1 None MIR-29 AGCACCA None None Scaffold4 437704 437790 - Bilateria Bilateria No 1 1
Gpa-Mir-29-P2g None MIR-29 AGCACCA None None Scaffold125 392521 392589 - Neoptera Bilateria No
Gpa-Mir-29-P2h None MIR-29 AGCACCA None None Scaffold391 34785 34867 - Neoptera Bilateria No
Gpa-Mir-31-P1 None MIR-31 GGCAAGA None None Scaffold11 1615018 1615090 + Glossinidae + Drosophilidae Bilateria No 1
Gpa-Mir-31-P2a None MIR-31 GGCAAGA None None Scaffold133 89437 89510 + G. pallidipes Bilateria Unknown
Gpa-Mir-31-P2b None MIR-31 GGCAAGA None None Scaffold133 89437 89510 + G. pallidipes Bilateria Unknown
Gpa-Mir-33 None MIR-33 UGCAUUG None None Scaffold27 1646314 1646379 + Bilateria Bilateria No 1
Gpa-Mir-34 None MIR-34 GGCAGUG None None Scaffold190 182044 182108 + Bilateria Bilateria No 1
Gpa-Mir-67-P12 V None MIR-67 CACAACC None None Scaffold68 383021 383084 + G. pallidipes Protostomia 2 No 1
Gpa-Mir-67-P13 V None MIR-67 CACAACC None None Scaffold50 84500 84565 + G. pallidipes Protostomia 2 No 1 1
Gpa-Mir-76 None MIR-76 UCGUUGU None None Scaffold89 68721 68782 - Nephrozoa Nephrozoa No 1
Gpa-Mir-87-P2 V None MIR-87 UGAGCAA None None Scaffold60 202315 202381 + Protostomia Protostomia 2 No 1
Gpa-Mir-92-o62 None MIR-92 AUUGCAC None None Scaffold35 40492 40554 + G. pallidipes Bilateria No 1 1
Gpa-Mir-92-P3 None MIR-92 AUUGCAC None None Scaffold58 1279284 1279346 + Pancrustacea Bilateria No 1
Gpa-Mir-92-P4 None MIR-92 AUUGCAC None None Scaffold58 1294167 1294231 + Pancrustacea Bilateria No 1
Gpa-Mir-96-P2 None MIR-96 UUGGCAC None None Scaffold117 224425 224487 + Bilateria Bilateria Unknown 1
Gpa-Mir-96-P3 None MIR-96 AUGGCAC None None Scaffold45 994006 994084 + Bilateria Bilateria No 1
Gpa-Mir-124 None MIR-124 AAGGCAC None None Scaffold98 1265603 1265662 - Bilateria Bilateria No 1
Gpa-Mir-133 None MIR-133 UGGUCCC None None Scaffold39 807489 807551 + Bilateria Bilateria No 1
Gpa-Mir-137 None MIR-137 AUUGCUU None None Scaffold10 2419386 2419446 + Bilateria Bilateria No 1
Gpa-Mir-184 None MIR-184 GGACGGA None None Scaffold213 299028 299089 + Nephrozoa Nephrozoa No 1
Gpa-Mir-190 None MIR-190 GAUAUGU None None Scaffold0 471097 471159 + Bilateria Bilateria No 1
Gpa-Mir-193-P1 None MIR-193 ACUGGCC None None Scaffold29 988353 988437 - Bilateria Bilateria No
Gpa-Mir-210 V None MIR-210 UGUGCGU None None Scaffold150 167190 167247 + Bilateria Bilateria 2 No 1
Gpa-Mir-216-P1 None MIR-216 AAUAUCA None None Scaffold19 1470953 1471009 + Nephrozoa Nephrozoa No
Gpa-Mir-219 None MIR-219 GAUUGUC None None Scaffold8 1087959 1088022 - Bilateria Bilateria No 1
Gpa-Mir-252-P2 None MIR-252 UAAGUAC None None Scaffold180 524239 524306 + Bilateria Bilateria No 1
Gpa-Mir-275 None MIR-275 CAGGUAC None None Scaffold315 241102 241168 + Arthropoda Arthropoda No 1 1
Gpa-Mir-276-P1 None MIR-276 AGGAACU None None Scaffold69 987274 987339 - Diptera Arthropoda No 1
Gpa-Mir-276-P2 None MIR-276 AGGAACU None None Scaffold69 779761 779821 - Diptera Arthropoda No 1 1
Gpa-Mir-277 None MIR-277 AAAUGCA None None Scaffold190 179087 179153 + Protostomia Protostomia No 1 1
Gpa-Mir-278 None MIR-278 CGGACGA None None Scaffold50 555937 555999 + Bilateria Bilateria No
Gpa-Mir-279-P1 None MIR-279 GACUAGA None None Scaffold26 90609 90682 + Pancrustacea Protostomia No 1
Gpa-Mir-279-P2 None MIR-279 GACUAGA None None Scaffold54 1350149 1350215 + Pancrustacea Protostomia No
Gpa-Mir-279-P3 None MIR-279 GACUAGA None None Scaffold54 1375135 1375199 + Pancrustacea Protostomia No 1
Gpa-Mir-281-P1 V None MIR-281 AAGAGAG None None Scaffold293 205475 205541 + Glossinidae + Drosophilidae Nephrozoa 2 No 1
Gpa-Mir-281-P2 V None MIR-281 GUCAUGG None None Scaffold293 205739 205817 + Glossinidae + Drosophilidae Nephrozoa 2 No 1
Gpa-Mir-282 None MIR-282 AGCCUCU None None Scaffold8 2954604 2954683 - Pancrustacea Pancrustacea No 1 1
Gpa-Mir-284 None MIR-284 CUGGAAU None None Scaffold36 918599 918678 + Glossinidae + Drosophilidae Glossinidae + Drosophilidae No 1
Gpa-Mir-305 None MIR-305 UUGUACU None None Scaffold315 241261 241320 + Cryptovermes Cryptovermes No
Gpa-Mir-306 None MIR-306 CAGGUAC None None Scaffold60 383833 383895 - Neoptera Neoptera No 1
Gpa-Mir-315 None MIR-315 UUUGAUU None None Scaffold14 123471 123535 - Nephrozoa Nephrozoa Unknown 1
Gpa-Mir-316 None MIR-316 GUCUUUU None None Scaffold164 76840 76898 + Pancrustacea Pancrustacea No 1
Gpa-Mir-317 None MIR-317 GAACACA None None Scaffold190 146205 146290 + Protostomia Protostomia No
Gpa-Mir-375 None MIR-375 UUGUUCG None None Scaffold48 719528 719595 + Nephrozoa Nephrozoa No 1
Gpa-Mir-927-P1 V None MIR-927 UUAGAAU None None Scaffold91 322631 322691 - Neoptera Neoptera 2 No 1
Gpa-Mir-929 None MIR-929 AAUUGAC None None Scaffold28 1414131 1414190 - Neoptera Neoptera No
Gpa-Mir-932 None MIR-932 CAAUUCC None None Scaffold102 630601 630664 - Neoptera Neoptera No
Gpa-Mir-956 V None MIR-956 UUCGAGA None None Scaffold41 1675605 1675724 - Glossinidae + Drosophilidae Glossinidae + Drosophilidae 2 No
Gpa-Mir-957 None MIR-957 GAAACCG None None Scaffold7 2697993 2698057 - Diptera Diptera No 1
Gpa-Mir-965 None MIR-965 AAGCGUA None None Scaffold373 109288 109379 - Pancrustacea Pancrustacea No 1 1 1
Gpa-Mir-970 None MIR-970 CAUAAGA None None Scaffold42 273921 273989 + Aparaglossata Aparaglossata No
Gpa-Mir-971 None MIR-971 UGGUGUU None None Scaffold16 347672 347733 + Neoptera Neoptera No 1
Gpa-Mir-987 None MIR-987 AAAGUAA None None Scaffold323 87572 87636 + Glossinidae + Drosophilidae Glossinidae + Drosophilidae Unknown 1
Gpa-Mir-988 None MIR-988 CCCUUGU None None Scaffold61 660052 660108 - Panorpida Panorpida No 1
Gpa-Mir-989 None MIR-989 GUGAUGU None None Scaffold477 52155 52383 + Endopterygota Endopterygota No
Gpa-Mir-999 None MIR-999 GUUAACU None None Scaffold168 823176 823236 + Diptera Diptera No 1 1
Gpa-Mir-1000 None MIR-1000 UAUUGUC None None Scaffold138 468598 468663 + Neoptera Neoptera No 1 1
Gpa-Mir-1175 None MIR-1175 GAGAUUC None None Scaffold201 126261 126372 + Protostomia Protostomia No 1 1
Gpa-Mir-2001 None MIR-2001 UUGUGAC None None Scaffold4 2050284 2050374 - Bilateria Bilateria No 1
Gpa-Novel-1 None GPA-NOVEL-1 AAGUAGU None None Scaffold194 173208 173272 - G. pallidipes G. pallidipes No
Gpa-Novel-2 None GPA-NOVEL-2 AAUGCCC None None Scaffold29 988131 988195 - G. pallidipes G. pallidipes No
Gpa-Novel-3 None GPA-NOVEL-3 GAUCUUC None None Scaffold55 42450 42510 - G. pallidipes G. pallidipes No 1

(red - mature/co-mature, blue - star)

Download sequences for: precursor | 5p | 3p | mature | star | mature/star | loop | extend_pre | all

Download genome coordinates (GFF format)

Download count matrix