MirGeneDB 3.0
MirGeneDB ID

Gpa-Mir-3

Family name MIR-3 (all species)
Species Tsetse fly (Glossina pallidipes)
MiRBase ID
Paralogues
Orthologues Aae-Mir-3-o1a  Aae-Mir-3-o1b  Aae-Mir-3-o2  Aga-Mir-3-o1  Aga-Mir-3-o2  Bge-Mir-3-P28a-v1  Bge-Mir-3-P28b-v1  Bge-Mir-3-P29-v1  Dan-Mir-3-P1  Dan-Mir-3-P2  Dan-Mir-3-P3  Dlo-Mir-3  Dma-Mir-3  Dme-Mir-3-P1  Dme-Mir-3-P2  Dme-Mir-3-P3  Dmo-Mir-3-P1  Dmo-Mir-3-P2  Dmo-Mir-3-P3  Dpu-Mir-3  Dsi-Mir-3-P1  Dsi-Mir-3-P2  Dsi-Mir-3-P3  Dya-Mir-3-P1  Dya-Mir-3-P2  Dya-Mir-3-P3  Hme-Mir-3-P14  Hme-Mir-3-P15  Hme-Mir-3-P16  Hme-Mir-3-P17  Hme-Mir-3-P18  Hme-Mir-3-P19  Hme-Mir-3-P20  Hme-Mir-3-P21  Hme-Mir-3-P22  Hme-Mir-3-P23  Hme-Mir-3-P24  Hme-Mir-3-P25  Hme-Mir-3-P26  Hme-Mir-3-P27  Tca-Mir-3-P4  Tca-Mir-3-P5  Tca-Mir-3-P6  Tca-Mir-3-P7-v1  Tca-Mir-3-P8  Tca-Mir-3-P9a  Tca-Mir-3-P9b  Tca-Mir-3-P10  Tca-Mir-3-P11  Tca-Mir-3-P12a  Tca-Mir-3-P12b  Tca-Mir-3-P13a  Tca-Mir-3-P13b 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Pancrustacea
Genome context
(GpalI1)		 Scaffold26: 89648-89709 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-3)		 Mir-3 Scaffold26: 89648-89709 [+] Ensembl
Mir-279-P1 Scaffold26: 90609-90682 [+] Ensembl
Mir-2-P5-v2 Scaffold26: 90894-90956 [+] Ensembl
Mir-2-P5-v1 Scaffold26: 90896-90954 [+] Ensembl
Mir-2-P6 Scaffold26: 93729-93811 [+] Ensembl
Seed CACUGGA
Precursor
(pre-Mir +30nt flank)		 
UUAUUUAAAUAUCUGACUAAUCUGUCUUAAGAUACACCUUGUCCAGUUUAUGUUUCCGACGAUUGGACAAACACUGGACCAAGUGUGUCUCGAGAAGGAUUGGACUUCAACAAAAAGUGUAA
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Structure
        10           20        30        40        50          
UUAUUUAAAUAUCUGAC---|     G   UA        CUU       UUAUGUUUCCGA 
                    UAAUCU UCU  AGAUACAC   GUCCAGU            \
                    GUUAGG AGA  UCUGUGUG   CAGGUCA            C
AAUGUGAAAAACAACUUCAG^     A   GC        AAC       CAAACAGGUUAG 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To To To To To To To To To To To To To To To To To To To To To
Star sequence

Gpa-Mir-3_5p* (predicted)
mirBase accessionNone
Sequence 
0- GAUACACCUUGUCCAGUUUAU -21
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Mature sequence

Gpa-Mir-3_3p
mirBase accessionNone
Sequence 
40- ACACUGGACCAAGUGUGUCUCG -62
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