MirGeneDB 3.0
MirGeneDB ID

Tca-Mir-3-P4

Family name MIR-3 (all species)
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-309a
Paralogues Tca-Mir-3-P5  Tca-Mir-3-P6  Tca-Mir-3-P7-v1  Tca-Mir-3-P8  Tca-Mir-3-P9a  Tca-Mir-3-P9b  Tca-Mir-3-P10  Tca-Mir-3-P11  Tca-Mir-3-P12a  Tca-Mir-3-P12b  Tca-Mir-3-P13a  Tca-Mir-3-P13b 
Orthologues Dlo-Mir-3  Dma-Mir-3  Dpu-Mir-3  Gpa-Mir-3 
Node of Origin (locus) T. castaneum
Node of Origin (family) Pancrustacea
Genome context
(Tcas5.2)		 LG5: 7455958-7456014 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-3-P4)		 Mir-9-P9b-v1 LG5: 7455728-7455787 [+] Ensembl
Mir-9-P9b-v2 LG5: 7455728-7455788 [+] Ensembl
Mir-2-P5d LG5: 7455840-7455901 [+] Ensembl
Mir-3-P4 LG5: 7455958-7456014 [+] Ensembl
Mir-3893 LG5: 7457235-7457292 [+] Ensembl
Mir-3-P6 LG5: 7457335-7457391 [+] Ensembl
Mir-3-P5 LG5: 7457453-7457508 [+] Ensembl
Mir-36 LG5: 7457551-7457607 [+] Ensembl
Seed GAUGAAC
Precursor
(pre-Mir +30nt flank)		 
GAACUUGGAGAAGAAAAACGCUAAUCUGUUAGAUGAACUCGACUCGGCUGAUGAUAAAAAAAACAUCACUGGGUUCAGUUUGUCCAAUGGUUUUAGCUAAAAGUCAUCGCUGAAAAA
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Structure
        10         20         30        40        50        
GAACUUGGAGAAGAAAAAC-     U-|    A  UG    C       C     AUAA 
                    GCUAA  CUGUU GA  AACU GACUCGG UGAUG    A
                    CGAUU  GGUAA CU  UUGA UUGGGUC ACUAC    A
AAAAAGUCGCUACUGAAAAU     UU^    C  GU    C       -     AAAA 
     110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Mature sequence

Tca-Mir-3-P4_5p
mirBase accessionMIMAT0018750
Sequence 
0- AGAUGAACUCGACUCGGCUGAUG -23
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Star sequence

Tca-Mir-3-P4_3p*
mirBase accessionMIMAT0018751
Sequence 
35- UCACUGGGUUCAGUUUGUCCAA -57
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