MirGeneDB 2.1
MirGeneDB ID

Tca-Mir-3-P5

Family name MIR-3 (all species)
Seed CACUGGG
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-309b
Paralogues Tca-Mir-3-P4  Tca-Mir-3-P6  Tca-Mir-3-P7-v1  Tca-Mir-3-P7-v2  Tca-Mir-3-P8  Tca-Mir-3-P9a  Tca-Mir-3-P9b  Tca-Mir-3-P10  Tca-Mir-3-P11  Tca-Mir-3-P12a  Tca-Mir-3-P12b  Tca-Mir-3-P13a  Tca-Mir-3-P13b 
Orthologues Dma-Mir-3  Dpu-Mir-3 
Node of Origin (locus) T. castaneum
Node of Origin (family) Pancrustacea
Genome context
(Tcas5.2)		 LG5: 7457453-7457508 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-3-P5)		 Mir-9-o9-v1 LG5: 7455728-7455787 [+] Ensembl
Mir-9-o9-v2 LG5: 7455728-7455788 [+] Ensembl
Mir-2-P10b LG5: 7455840-7455901 [+] Ensembl
Mir-3-P4 LG5: 7455958-7456014 [+] Ensembl
Mir-3893 LG5: 7457235-7457292 [+] Ensembl
Mir-3-P6 LG5: 7457335-7457391 [+] Ensembl
Mir-3-P5 LG5: 7457453-7457508 [+] Ensembl
Mir-36 LG5: 7457551-7457607 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AUAUUAUCAAACCAUUUGCCCAUCACAUCUCGACUAACUCGAUUCAGUUGAUGUUAAUUAGAUAUCACUGGGUUGAGUUUGUCUCGAUGUUUUGUGCCCAUCAUCAAGGAUCAAUC
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Structure
        10          20        30        40        50        
AUAUUAUCAAACCAUUU--| C  UC     UC   U             U    UUAA 
                   GC CA  ACAUC  GAC AACUCGAUUCAGU GAUG    \
                   CG GU  UGUAG  CUG UUGAGUUGGGUCA CUAU    U
CUAACUAGGAACUACUACC^ U  UU     CU   U             -    AGAU 
    110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-3-P5_5p*
mirBase accessionMIMAT0018886
Sequence 
0- CGACUAACUCGAUUCAGUUGAUG -23
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Mature sequence

Tca-Mir-3-P5_3p
mirBase accessionMIMAT0018887
Sequence 
34- UCACUGGGUUGAGUUUGUCUCG -56
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