MirGeneDB 2.1

MirGeneDB ID

Tca-Mir-36

Family name MIR-36 (all species)
Seed CACCGGG
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-3791
Paralogues
Orthologues Asu-Mir-36-o27  Asu-Mir-36-o28  Asu-Mir-36-o29-v1  Asu-Mir-36-o29-v2  Asu-Mir-36-o30  Asu-Mir-36-o31  Asu-Mir-36-o32  Bge-Mir-36  Bpl-Mir-36-P17  Bpl-Mir-36-P18  Bpl-Mir-36-P19  Cbr-Mir-36-o1  Cbr-Mir-36-o2  Cbr-Mir-36-o3  Cbr-Mir-36-o4  Cbr-Mir-36-o5  Cbr-Mir-36-o6  Cbr-Mir-36-o7a  Cbr-Mir-36-o7b  Cbr-Mir-36-o7c  Cbr-Mir-36-o8a  Cbr-Mir-36-o8b  Cbr-Mir-36-o8c  Cbr-Mir-36-o9  Cbr-Mir-36-o10  Cbr-Mir-36-o11  Cbr-Mir-36-o12  Cbr-Mir-36-o13  Cbr-Mir-36-o14  Cbr-Mir-36-o15  Cbr-Mir-36-o16  Cbr-Mir-36-o17  Cbr-Mir-36-o18  Cbr-Mir-36-o19  Cbr-Mir-36-o20  Cbr-Mir-36-o21  Cbr-Mir-36-o22  Cbr-Mir-36-o23  Cbr-Mir-36-o24  Cbr-Mir-36-o25  Cbr-Mir-36-o26  Cel-Mir-36-P1  Cel-Mir-36-P2  Cel-Mir-36-P3  Cel-Mir-36-P4  Cel-Mir-36-P5  Cel-Mir-36-P6  Cel-Mir-36-P7  Cel-Mir-36-P8  Cgi-Mir-36  Cte-Mir-36  Dma-Mir-36  Dpu-Mir-36  Efe-Mir-36-P9  Efe-Mir-36-P10  Esc-Mir-36-P14  Esc-Mir-36-P15  Isc-Mir-36  Lpo-Mir-36-P11  Lpo-Mir-36-P12  Lpo-Mir-36-P13  Npo-Mir-36  Obi-Mir-36-P14  Obi-Mir-36-P15  Ovu-Mir-36-P14  Ovu-Mir-36-P15  Sme-Mir-36-P20  Sme-Mir-36-P21  Sme-Mir-36-P22 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(Tcas5.2)
LG5: 7457551-7457607 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-36)
Mir-9-o9-v1 LG5: 7455728-7455787 [+] Ensembl
Mir-9-o9-v2 LG5: 7455728-7455788 [+] Ensembl
Mir-2-P10b LG5: 7455840-7455901 [+] Ensembl
Mir-3-P4 LG5: 7455958-7456014 [+] Ensembl
Mir-3893 LG5: 7457235-7457292 [+] Ensembl
Mir-3-P6 LG5: 7457335-7457391 [+] Ensembl
Mir-3-P5 LG5: 7457453-7457508 [+] Ensembl
Mir-36 LG5: 7457551-7457607 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAUCAUCAAGGAUCAAUCAAGUUAAACGUUCGGUGGUUUUAUUACGGUGGUUGCGAUUUUUACAAUCACCGGGUAGAAAUCAUCUCAUGUUUAACCAAAUUCAACAACCAAAUACCA
Get precursor sequence
Structure
        10        20          30        40        50        
CAUCAUCAAGGAUCAAUCAA--|        UC         AUUA        GCGAU 
                      GUUAAACGU  GGUGGUUUU    CGGUGGUU     \
                      CAAUUUGUA  CUACUAAAG    GCCACUAA     U
ACCAUAAACCAACAACUUAAAC^        CU         AUGG        CAUUU 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-36_5p*

mirBase accessionMIMAT0018882
Sequence
0- CGGUGGUUUUAUUACGGUGGUU -22
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Mature sequence

Tca-Mir-36_3p

mirBase accessionMIMAT0018883
Sequence
35- UCACCGGGUAGAAAUCAUCUCA -57
Get sequence