Mir-36-P12

MirGeneDB ID

Lpo-Mir-36-P12

Family name

MIR-36 (all species)

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-36-P11 Lpo-Mir-36-P13

Orthologues

Agr-Mir-36 Bge-Mir-36 Cbr-Mir-36-o12 Cte-Mir-36 Dgr-Mir-36 Dlo-Mir-36 Dma-Mir-36 Dpu-Mir-36 Eba-Mir-36 Gsp-Mir-36 Isc-Mir-36 Lhy-Mir-36 Llo-Mir-36 Mgi-Mir-36 Mom-Mir-36 Npo-Mir-36 Ofu-Mir-36 Pau-Mir-36 Pcr-Mir-36 Pdu-Mir-36 Pve-Mir-36 Rph-Mir-36 Snu-Mir-36 Tca-Mir-36 War-Mir-36

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Protostomia

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013671891.1: 17371-17431 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-36-P12)

Mir-279-P7 NW_013671891.1: 16421-16479 [+] Ensembl
Mir-36-P12 NW_013671891.1: 17371-17431 [+] Ensembl

Seed

CACCGGG

Precursor
(pre-Mir +30nt flank)

UCACUGGAUUACCUAAUUAGUGUACCCACCUGAUGAGCGUAGACCCGGUAAGUGUAGAUUUUCUAUCAUCACCGGGUAAACAUUCAUCCGGGUUUUGCACACAUUUAUCGACGAAAGCUAC

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Structure

        10          20        30         40        50          
UCACUGGAUUACCUAAUUA--|    CCC     -     C  AG       AAGUGUAGAU 
                     GUGUA   ACCUG AUGAG GU  ACCCGGU          \
                     CACGU   UGGGC UACUU CA  UGGGCCA          U
CAUCGAAAGCAGCUAUUUACA^    UU-     C     A  AA       CUACUAUCUU 
 .       110       100         90        80        70

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Ge	Ge	So	So	So	To

Star sequence

Lpo-Mir-36-P12_5p* (predicted)

mirBase accession

None

Sequence

0- UGAUGAGCGUAGACCCGGUAAGU -23

Get sequence

Mature sequence

Lpo-Mir-36-P12_3p

mirBase accession

None

Sequence

38- UCACCGGGUAAACAUUCAUCCGG -61

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