MirGeneDB ID | Lpo-Mir-36-P13 |
Family name |
MIR-36 (all species) |
Seed |
CCCCGGG |
Species |
Atlantic horseshoe crab (Limulus polyphemus) |
MiRBase ID |
|
Paralogues |
Lpo-Mir-36-P11
Lpo-Mir-36-P12
|
Orthologues |
Bge-Mir-36
Cbr-Mir-36-o13
Cgi-Mir-36
Cte-Mir-36
Dma-Mir-36
Dpu-Mir-36
Isc-Mir-36
Npo-Mir-36
Tca-Mir-36
|
Node of Origin (locus) |
L. polyphemus
|
Node of Origin (family) |
Protostomia
|
Genome context (GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013670263.1: 49161-49221 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCACAGAAUAUCAUCUCAGGUGUCCAAAAGUGAUGGAUGUCCAUUUGGUAGAUGUUUUUAAUUGUUCAUCCCCGGGUGAACAUUCAUCCGGCCAUGUAUGCGCAACUUUUGCCACCUCGUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UCACAGAAUAUCAUCUCAG CCAAAA- --| C UA UUUUU
GUGU GU GAUGGAUGU CAUUUGG GAUG A
CGCG CG CUACUUACA GUGGGCC CUAC A
GUGCUCCACCGUUUUCAA- UAUGUAC GC^ A C- UUGUU
. 110 100 90 80 70 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Lpo-Mir-36-P13_5p* (predicted) |
mirBase accession | None |
Sequence |
0- UGAUGGAUGUCCAUUUGGUAGAUG -24
Get sequence
|
Mature sequence |
Lpo-Mir-36-P13_3p (predicted) |
mirBase accession | None |
Sequence |
38- UCCCCGGGUGAACAUUCAUCCGG -61
Get sequence
|