Mir-36-P11

MirGeneDB ID

Lpo-Mir-36-P11

Family name

MIR-36 (all species)

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-36-P12 Lpo-Mir-36-P13

Orthologues

Agr-Mir-36 Bge-Mir-36 Cbr-Mir-36-o11 Cte-Mir-36 Dgr-Mir-36 Dlo-Mir-36 Dma-Mir-36 Dpu-Mir-36 Eba-Mir-36 Gsp-Mir-36 Isc-Mir-36 Lhy-Mir-36 Llo-Mir-36 Mgi-Mir-36 Mom-Mir-36 Npo-Mir-36 Ofu-Mir-36 Pau-Mir-36 Pcr-Mir-36 Pdu-Mir-36 Pve-Mir-36 Rph-Mir-36 Snu-Mir-36 Tca-Mir-36 War-Mir-36

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Protostomia

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013666253.1: 359278-359336 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-36-P11)

Mir-279-P6 NW_013666253.1: 358370-358428 [+] Ensembl
Mir-36-P11 NW_013666253.1: 359278-359336 [+] Ensembl

Seed

CACCGGG

Precursor
(pre-Mir +30nt flank)

AGAAGACAACCAAAAGCUAGUGUACUCGCCGAGUGGAUGUUCACUCGGUCAUGCAGAUUUAUAUCAUCACCGGGUAAACAUUCAUCCGGGAUCUGAACACACAAAUCUUCGGCAUCUAC

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Structure

        10        20           30        40        50         
AGAAGACAACCAAAAGCUA    AC---| G   AG        C       C   CAGAU 
                   GUGU     UC CCG  UGGAUGUU ACUCGGU AUG     \
                   CACA     AG GGC  ACUUACAA UGGGCCA UAC     U
CAUCUACGGCUUCUAAACA    AGUCU^ -   CU        A       C   UAUAU 
       110       100        90         80        70        60

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Ge	Ge	So	So	So	To

Star sequence

Lpo-Mir-36-P11_5p* (predicted)

mirBase accession

None

Sequence

0- GAGUGGAUGUUCACUCGGUCAUG -23

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Mature sequence

Lpo-Mir-36-P11_3p

mirBase accession

None

Sequence

36- UCACCGGGUAAACAUUCAUCCGG -59

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