MirGeneDB 2.1

MirGeneDB ID

Lpo-Mir-36-P11

Family name MIR-36 (all species)
Seed CACCGGG
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-36-P12  Lpo-Mir-36-P13 
Orthologues Bge-Mir-36  Cbr-Mir-36-o11  Cgi-Mir-36  Cte-Mir-36  Dma-Mir-36  Dpu-Mir-36  Isc-Mir-36  Npo-Mir-36  Tca-Mir-36 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Protostomia
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)
NW_013666253.1: 359278-359336 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGAAGACAACCAAAAGCUAGUGUACUCGCCGAGUGGAUGUUCACUCGGUCAUGCAGAUUUAUAUCAUCACCGGGUAAACAUUCAUCCGGGAUCUGAACACACAAAUCUUCGGCAUCUAC
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Structure
        10        20           30        40        50         
AGAAGACAACCAAAAGCUA    AC---| G   AG        C       C   CAGAU 
                   GUGU     UC CCG  UGGAUGUU ACUCGGU AUG     \
                   CACA     AG GGC  ACUUACAA UGGGCCA UAC     U
CAUCUACGGCUUCUAAACA    AGUCU^ -   CU        A       C   UAUAU 
       110       100        90         80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Ma Ma To
Star sequence

Lpo-Mir-36-P11_5p* (predicted)

mirBase accessionNone
Sequence
0- GAGUGGAUGUUCACUCGGUCAUG -23
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Mature sequence

Lpo-Mir-36-P11_3p

mirBase accessionNone
Sequence
36- UCACCGGGUAAACAUUCAUCCGG -59
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