MirGeneDB ID | Lpo-Mir-36-P11 |
Family name |
MIR-36 (all species) |
Seed |
CACCGGG |
Species |
Atlantic horseshoe crab (Limulus polyphemus) |
MiRBase ID |
|
Paralogues |
Lpo-Mir-36-P12
Lpo-Mir-36-P13
|
Orthologues |
Bge-Mir-36
Cbr-Mir-36-o11
Cgi-Mir-36
Cte-Mir-36
Dma-Mir-36
Dpu-Mir-36
Isc-Mir-36
Npo-Mir-36
Tca-Mir-36
|
Node of Origin (locus) |
L. polyphemus
|
Node of Origin (family) |
Protostomia
|
Genome context (GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013666253.1: 359278-359336 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGAAGACAACCAAAAGCUAGUGUACUCGCCGAGUGGAUGUUCACUCGGUCAUGCAGAUUUAUAUCAUCACCGGGUAAACAUUCAUCCGGGAUCUGAACACACAAAUCUUCGGCAUCUAC
Get precursor sequence
|
Structure | 10 20 30 40 50
AGAAGACAACCAAAAGCUA AC---| G AG C C CAGAU
GUGU UC CCG UGGAUGUU ACUCGGU AUG \
CACA AG GGC ACUUACAA UGGGCCA UAC U
CAUCUACGGCUUCUAAACA AGUCU^ - CU A C UAUAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Lpo-Mir-36-P11_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GAGUGGAUGUUCACUCGGUCAUG -23
Get sequence
|
Mature sequence |
Lpo-Mir-36-P11_3p |
mirBase accession | None |
Sequence |
36- UCACCGGGUAAACAUUCAUCCGG -59
Get sequence
|