MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-279-P7

Family name MIR-279 (all species)
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-279-P4  Lpo-Mir-279-P5  Lpo-Mir-279-P6  Lpo-Mir-279-P8 
Orthologues Agr-Mir-279  Bge-Mir-279-o7  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Protostomia
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013671891.1: 16421-16479 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-279-P7)		 Mir-279-P7 NW_013671891.1: 16421-16479 [+] Ensembl
Mir-36-P12 NW_013671891.1: 17371-17431 [+] Ensembl
Seed GACUAGA
Precursor
(pre-Mir +30nt flank)		 
GGGAGUUUUGACAUUAUGUCUUUGACUGUAGAUGGUUGUGAGUCUGGUUCAUGUGUUCCCGUUACCAUGACUAGAUCCACACUCAUCCAUGGGAAGAGACAUUUCUUCAGUUGACACUU
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Structure
        10          20        30        40        50         
GGGAGUUUUGACAUUAU--|     GA    A    GU    AG      U    UGUUC 
                   GUCUUU  CUGU GAUG  UGUG  UCUGGU CAUG     C
                   CAGAGA  GGUA CUAC  ACAC  AGAUCA GUAC     C
UUCACAGUUGACUUCUUUA^     AG    C    UC    CU      -    CAUUG 
       110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Ge Ge So So So To
Star sequence

Lpo-Mir-279-P7_5p* (predicted)
mirBase accessionNone
Sequence 
0- GAUGGUUGUGAGUCUGGUUCAUG -23
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Mature sequence

Lpo-Mir-279-P7_3p
mirBase accessionNone
Sequence 
37- UGACUAGAUCCACACUCAUCCA -59
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