| MirGeneDB ID | Lpo-Mir-279-P4 |
|---|
| Family name |
MIR-279 (all species) |
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| Species |
Atlantic horseshoe crab (Limulus polyphemus) |
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| MiRBase ID |
|
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| Paralogues |
Lpo-Mir-279-P5
Lpo-Mir-279-P6
Lpo-Mir-279-P7
Lpo-Mir-279-P8
|
|---|
| Orthologues |
Agr-Mir-279
Bpl-Mir-279
Dlo-Mir-279-o4
Eba-Mir-279
Egr-Mir-279
Esc-Mir-279
Gsa-Mir-279
Gsp-Mir-279
Hru-Mir-279
Isc-Mir-279
Lgi-Mir-279
Lhy-Mir-279
Llo-Mir-279
Mgi-Mir-279
Mom-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
Pau-Mir-279
Pcr-Mir-279
Pve-Mir-279
Rph-Mir-279
Sma-Mir-279
Sne-Mir-279
|
|---|
| Node of Origin (locus) |
L. polyphemus
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013666709.1: 211951-212009 [+]
Ensembl
|
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| Seed |
GACUAGA |
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Precursor
(pre-Mir +30nt flank) |
AAGAUUACCUGUUGUGUUCUAUUGUGGAUGGAUGACUGUGCGUCUGGUCCAUGUGACUCUGUUAGCAUGACUAGAUCCACACUCAUCCAUUCCCAUGGAUACUGACAUCUAUCCAUCUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAGAUUACCUGUUGUGU---| U U C C C UGACU
UCUAU G GGAUGGAUGA UGUG GUCUGGUC AUG C
AGGUA C CUUACCUACU ACAC UAGAUCAG UAC U
UUCUACCUAUCUACAGUCAU^ - C C C - GAUUG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Lpo-Mir-279-P4_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GAUGACUGUGCGUCUGGUCCAUG -23
Get sequence
|
|---|
| Mature sequence |
Lpo-Mir-279-P4_3p |
| mirBase accession | None |
|---|
| Sequence |
37- UGACUAGAUCCACACUCAUCCA -59
Get sequence
|
|---|
