MirGeneDB 3.0

MirGeneDB ID

Agr-Mir-279

Family name

MIR-279 (all species)

Species

West Indian fuzzy chiton (Acanthopleura granulata )

MiRBase ID

Paralogues

Orthologues

Aae-Mir-279-P1a Aae-Mir-279-P1b1 Aae-Mir-279-P1b2 Aae-Mir-279-P2 Aae-Mir-279-P3 Aae-Mir-279-P25 Aga-Mir-279-P1a Aga-Mir-279-P1b Aga-Mir-279-P2 Aga-Mir-279-P3 Aga-Mir-279-P25 Asu-Mir-279-o22 Asu-Mir-279-o23 Asu-Mir-279-o24 Asu-Mir-279-o25 Asu-Mir-279-o26 Ava-Mir-279-P21a Ava-Mir-279-P21b Ava-Mir-279-P22a Ava-Mir-279-P22b Ava-Mir-279-P23a Ava-Mir-279-P23b Ava-Mir-279-P24a Ava-Mir-279-P24b Bge-Mir-279-o5 Bge-Mir-279-o6 Bge-Mir-279-o7 Bge-Mir-279-P2 Bge-Mir-279-P3 Bko-Mir-279-o1 Bko-Mir-279-o2 Bpl-Mir-279 Cbr-Mir-279-P10 Cbr-Mir-279-P11a Cbr-Mir-279-P11b Cbr-Mir-279-P12 Cbr-Mir-279-P13 Cel-Mir-279-P10 Cel-Mir-279-P11 Cel-Mir-279-P12 Cel-Mir-279-P13 Csc-Mir-279-P9a Csc-Mir-279-P9b Cte-Mir-279-o34 Cte-Mir-279-o35 Cte-Mir-279-o36 Dan-Mir-279-P1 Dan-Mir-279-P2 Dan-Mir-279-P3 Dgr-Mir-279-o48 Dgr-Mir-279-o49 Dlo-Mir-279-o4 Dlo-Mir-279-P1 Dlo-Mir-279-P2 Dlo-Mir-279-P3 Dma-Mir-279-o8 Dma-Mir-279-o9 Dma-Mir-279-P1c Dma-Mir-279-P1d Dma-Mir-279-P2 Dma-Mir-279-P3 Dme-Mir-279-P1 Dme-Mir-279-P2 Dme-Mir-279-P3 Dmo-Mir-279-P1 Dmo-Mir-279-P2 Dmo-Mir-279-P3 Dpu-Mir-279-o8 Dpu-Mir-279-o9 Dpu-Mir-279-P1c Dpu-Mir-279-P1d Dpu-Mir-279-P2 Dpu-Mir-279-P3 Dsi-Mir-279-P1 Dsi-Mir-279-P2 Dsi-Mir-279-P3 Dya-Mir-279-P1 Dya-Mir-279-P2 Dya-Mir-279-P3 Eba-Mir-279 Efe-Mir-279-o37 Efe-Mir-279-o38 Efe-Mir-279-o39 Efe-Mir-279-o40 Efe-Mir-279-o41 Efe-Mir-279-o42 Efe-Mir-279-o43 Egr-Mir-279 Esc-Mir-279 Gpa-Mir-279-P1 Gpa-Mir-279-P2 Gpa-Mir-279-P3 Gsa-Mir-279 Gsp-Mir-279 Hme-Mir-279-o1 Hme-Mir-279-o2 Hme-Mir-279-P2 Hme-Mir-279-P3 Hru-Mir-279 Isc-Mir-279 Lan-Mir-279-P17 Lan-Mir-279-P18 Lgi-Mir-279 Lhy-Mir-279 Llo-Mir-279 Lpo-Mir-279-P4 Lpo-Mir-279-P5 Lpo-Mir-279-P6 Lpo-Mir-279-P7 Lpo-Mir-279-P8 Mgi-Mir-279 Mom-Mir-279 Npo-Mir-279 Obi-Mir-279 Ofu-Mir-279-o53 Ofu-Mir-279-o54 Ofu-Mir-279-o55 Ofu-Mir-279-o56 Ofu-Mir-279-o57 Ovu-Mir-279 Pau-Mir-279 Pca-Mir-279-o27 Pca-Mir-279-o28 Pca-Mir-279-o29 Pca-Mir-279-o30 Pca-Mir-279-o31 Pca-Mir-279-o32 Pca-Mir-279-o33 Pcr-Mir-279 Pdu-Mir-279-o44 Pdu-Mir-279-o45 Pdu-Mir-279-o46 Pdu-Mir-279-o47 Pve-Mir-279 Rph-Mir-279 Sma-Mir-279 Sme-Mir-279-P19 Sme-Mir-279-P20 Sne-Mir-279 Snu-Mir-279-o50 Snu-Mir-279-o51 Snu-Mir-279-o52 Tca-Mir-279-o3 Tca-Mir-279-P1c Tca-Mir-279-P1d Tca-Mir-279-P2 Tca-Mir-279-P3 Tur-Mir-279-P26 Tur-Mir-279-P27a Tur-Mir-279-P27b War-Mir-279-P14 War-Mir-279-P15 War-Mir-279-P16

Node of Origin (locus)

Protostomia

Node of Origin (family)

Protostomia

Genome context
(GCA_016165875.1_ASM1616587v1_Acanthopleura_granulata)

JABBOT010000013.1: 13302116-13302173 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-279)

Mir-279 JABBOT010000013.1: 13302116-13302173 [+] Ensembl
Mir-36 JABBOT010000013.1: 13308386-13308446 [+] Ensembl

Seed

Precursor
(pre-Mir +30nt flank)

UUUUUUACAUAAGUGGUUCUUCACGUACGGAUGACUGUGGUUCUUGUCCAUGUUAUAAUCGGGAUCAUGACUAGAUCCACACUCAUCCACUGUGUAGAGCCUUGACGACUGAACCACC

Get precursor sequence

Structure

        10           20        30        40        50         
UUUUUUACAUAAGUGGU---|  U    UAC      C     U   U   C   UUAUAA 
                    UCU CACG   GGAUGA UGUGG UCU GUC AUG      \
                    AGA GUGU   CCUACU ACACC AGA CAG UAC      U
CCACCAAGUCAGCAGUUCCG^  U    CA-      C     U   U   -   UAGGGC 
      110       100        90         80        70         60

Deep sequencing

Go to detailed chart

3' NTU

No

Motifs

CNNC at 3p(+17)

Tissue expression

-

+

To

Star sequence

Agr-Mir-279_5p* (predicted)

mirBase accession

None

Sequence

0- AUGACUGUGGUUCUUGUCCAUG -22

Get sequence

Mature sequence

Agr-Mir-279_3p

mirBase accession

None

Sequence

37- UGACUAGAUCCACACUCAUCC -58

Get sequence