MirGeneDB

MirGeneDB ID

Dan-Mir-279-P3

Family name MIR-279 (all species)
Seed GACUAGA
Species Fruit fly (Drosophila ananassae)
MiRBase ID
Paralogues Dan-Mir-279-P1  Dan-Mir-279-P2 
Orthologues Aae-Mir-279-P3  Cgi-Mir-279  Dme-Mir-279-P3  Dmo-Mir-279-P3  Dpu-Mir-279-o3  Isc-Mir-279  Lgi-Mir-279 
Node of Origin (locus) Diptera
Node of Origin (family) Protostomia
Genome context
(Dana_caf1)
scaffold_13340: 14198981-14199044 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUGGGGUCUUUUUCUGACUCUAUUUUGUCGGCGAACAUGGAUCUAGUGCACGGUGUUUCAUGAUUAAGUUCGUGACUAGAUUUCAUGCUCGUCUAUUAAGUUGGGUCAGCACACCAAAGAGUCG
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Structure
        10          20        30         40        50        60 
UUGGGGUCUUUUUCUGA--   U    U  C     A    -|       G    GUGUUUCA 
                   CUC AUUU GU GGCGA CAUG GAUCUAGU CACG        U
                   GGG UGAA UA CUGCU GUAC UUAGAUCA GUGC        G
GCUGAGAAACCACACGACU   U    U  U     C    U^       -    UUGAAUUA 
  120       110       100        90        80         70
Deep sequencing
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CommentThere is a second Drosha site -1 relative to what is annotated here.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Da
Star sequence

Dan-Mir-279-P3_5p*

MirBase accessionNone
Sequence
0- GCGAACAUGGAUCUAGUGCACG -22
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Mature sequence

Dan-Mir-279-P3_3p

MirBase accessionNone
Sequence
42- UGACUAGAUUUCAUGCUCGUCU -64
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