MirGeneDB 3.0
MirGeneDB ID

Aae-Mir-279-P3

Family name MIR-279 (all species)
Species Yellow fever mosquito (Aedes aegypti)
MiRBase ID aae-mir-996
Paralogues Aae-Mir-279-P1a  Aae-Mir-279-P1b1  Aae-Mir-279-P1b2  Aae-Mir-279-P2  Aae-Mir-279-P25 
Orthologues Aga-Mir-279-P3  Agr-Mir-279  Bge-Mir-279-P3  Bpl-Mir-279  Dan-Mir-279-P3  Dlo-Mir-279-P3  Dma-Mir-279-P3  Dme-Mir-279-P3  Dmo-Mir-279-P3  Dpu-Mir-279-P3  Dsi-Mir-279-P3  Dya-Mir-279-P3  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gpa-Mir-279-P3  Gsa-Mir-279  Gsp-Mir-279  Hme-Mir-279-P3  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279  Tca-Mir-279-o3  Tca-Mir-279-P3 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Protostomia
Genome context
(Aaeg_L3)		 supercont1.437: 567506-567574 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-279-P3)		 Mir-279-P3 supercont1.437: 567506-567574 [-] Ensembl
Mir-279-P2 supercont1.437: 572258-572322 [-] Ensembl
Seed GACUAGA
Precursor
(pre-Mir +30nt flank)		 
CCCGCGGAGGAAGAAACUCAAUUUUCGUCGGCGUGCAUGAAUCUGGUGCACGGUUUUCCAGUUGUAAUAUCGCUUCGUGACUAGAUUACAUGCUCGUCUAUGAAGUUGAGAUCCGGCAACGCUACCAAG
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Structure
        10           20        30         40        50        60    
CCCGCGGAGGAAGAAAC---|      U   C    U     -        G    GUUUUCCAGUU 
                    UCAAUUU CGU GGCG GCAUG AAUCUGGU CACG           \
                    AGUUGAA GUA CUGC CGUAC UUAGAUCA GUGC           G
GAACCAUCGCAACGGCCUAG^      -   U    U     A        -    UUCGCUAUAAU 
       120       110        100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ge Ge So So To To To
Star sequence

Aae-Mir-279-P3_5p*
mirBase accessionNone
Sequence 
0- GCGUGCAUGAAUCUGGUGCACG -22
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Mature sequence

Aae-Mir-279-P3_3p
mirBase accessionMIMAT0014251
Sequence 
47- UGACUAGAUUACAUGCUCGUCU -69
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