MirGeneDB 3.0
MirGeneDB ID

Dma-Mir-279-P3

Family name MIR-279 (all species)
Species Large common water flea (Daphnia magna)
MiRBase ID
Paralogues Dma-Mir-279-o8  Dma-Mir-279-o9  Dma-Mir-279-P1c  Dma-Mir-279-P1d  Dma-Mir-279-P2 
Orthologues Aae-Mir-279-P3  Aga-Mir-279-P3  Agr-Mir-279  Bge-Mir-279-P3  Bpl-Mir-279  Dan-Mir-279-P3  Dlo-Mir-279-P3  Dme-Mir-279-P3  Dmo-Mir-279-P3  Dpu-Mir-279-P3  Dsi-Mir-279-P3  Dya-Mir-279-P3  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gpa-Mir-279-P3  Gsa-Mir-279  Gsp-Mir-279  Hme-Mir-279-P3  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279  Tca-Mir-279-o3  Tca-Mir-279-P3 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Protostomia
Genome context
(DMA_ASM399081)		 NC_046174.1: 9091763-9091828 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-279-P3)		 Mir-279-P2 NC_046174.1: 9091292-9091368 [+] Ensembl
Mir-279-P3 NC_046174.1: 9091763-9091828 [+] Ensembl
Seed GUGGGUC
Precursor
(pre-Mir +30nt flank)		 
AUUCCAACAGCUAGGGUUGGGCGCUCUCUAGGUGGGUCUGUUUCUAGUGCAUGUGUUUUCUGCCUGUUUGUUCAUGACUAGAUCCAUACUCAUCUAAAGGGACCCAAUCGUUCUACAUUAGUAAAA
Get precursor sequence
Structure
        10           20        30        40        50        60   
AUUCCAACAGCUAGGGU---|   CG    C         C  UU      G    UGUUUUCUG 
                    UGGG  CUCU UAGGUGGGU UG  UCUAGU CAUG         \
                    ACCC  GGGA AUCUACUCA AC  AGAUCA GUAC         C
AAAAUGAUUACAUCUUGCUA^   A-    A         U  CU      -    UUGUUUGUC 
    120       110        100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
01 02 03 04 05 06 07 08 09 10 11 12 13 14
Mature sequence

Dma-Mir-279-P3_5p
mirBase accessionNone
Sequence 
0- GGUGGGUCUGUUUCUAGUGCAUG -23
Get sequence
Co-mature sequence

Dma-Mir-279-P3_3p
mirBase accessionNone
Sequence 
44- UGACUAGAUCCAUACUCAUCUA -66
Get sequence