MirGeneDB 3.0
MirGeneDB ID

Dma-Mir-279-P1d

Family name MIR-279 (all species)
Species Large common water flea (Daphnia magna)
MiRBase ID
Paralogues Dma-Mir-279-o8  Dma-Mir-279-o9  Dma-Mir-279-P1c  Dma-Mir-279-P2  Dma-Mir-279-P3 
Orthologues Agr-Mir-279  Bko-Mir-279-o1  Bpl-Mir-279  Dan-Mir-279-P1  Dlo-Mir-279-P1  Dme-Mir-279-P1  Dmo-Mir-279-P1  Dpu-Mir-279-P1d  Dsi-Mir-279-P1  Dya-Mir-279-P1  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gpa-Mir-279-P1  Gsa-Mir-279  Gsp-Mir-279  Hme-Mir-279-o1  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279  Tca-Mir-279-P1d 
Node of Origin (locus) Daphnia
Node of Origin (family) Protostomia
Genome context
(DMA_ASM399081)		 NC_046175.1: 6285937-6286000 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-279-P1d)		 Mir-965 NC_046175.1: 6247768-6247831 [-] Ensembl
Mir-36 NC_046175.1: 6285796-6285856 [-] Ensembl
Mir-279-P1d NC_046175.1: 6285937-6286000 [-] Ensembl
Mir-12608 NC_046175.1: 6286446-6286507 [-] Ensembl
Mir-29-P2 NC_046175.1: 6286592-6286666 [-] Ensembl
Mir-2-P5 NC_046175.1: 6286723-6286816 [-] Ensembl
Mir-9-P9 NC_046175.1: 6286883-6286941 [-] Ensembl
Mir-279-P1c NC_046175.1: 6287015-6287090 [-] Ensembl
Seed GACUAGA
Precursor
(pre-Mir +30nt flank)		 
GAAGUGGGACAACUUAAGUGUGCGUCAGUCGGCGAGUUCGGUUUUAGUUAUAUUUUAUAUUCAGUCAGUAUGACUAGAACCCACACUCGUCCGGUUGCUGUAUUCAAAUUCGUCUUCAUCGACU
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Structure
        10          20        30          40        50        60
GAAGUGGGACAACUUAAGU--     U  GU   -     UC-|            UUUUAUA 
                     GUGCG CA  CGG CGAGU   GGUUUUAGUUAUA       U
                     UAUGU GU  GCC GCUCA   CCAAGAUCAGUAU       U
UCAGCUACUUCUGCUUAAACU     C  UG   U     CAC^            GACUGAC 
  120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
01 02 03 04 05 06 07 08 09 10 11 12 13 14
Star sequence

Dma-Mir-279-P1d_5p*
mirBase accessionNone
Sequence 
0- GGCGAGUUCGGUUUUAGUUAUA -22
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Mature sequence

Dma-Mir-279-P1d_3p
mirBase accessionNone
Sequence 
40- UGACUAGAACCCACACUCGUCCGG -64
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