Mir-29-P2

MirGeneDB ID

Dma-Mir-29-P2

Family name

MIR-29 (all species)

Species

Large common water flea (Daphnia magna)

MiRBase ID

Paralogues

Dma-Mir-29-P1

Orthologues

Aae-Mir-29-P2h Aca-Mir-29-P2b Aca-Mir-29-P2d Aga-Mir-29-P2h Agr-Mir-29-P2 Ami-Mir-29-P2b Ami-Mir-29-P2d Asu-Mir-29-P2 Bfl-Mir-29-P2 Bge-Mir-29-P2g Bge-Mir-29-P2h Bla-Mir-29-P2 Bta-Mir-29-P2b Bta-Mir-29-P2d7 Bta-Mir-29-P2d8 Cbr-Mir-29-P2 Cel-Mir-29-P2 Cfa-Mir-29-P2b Cfa-Mir-29-P2d7 Cfa-Mir-29-P2d8 Cja-Mir-29-P2b Cja-Mir-29-P2d Cli-Mir-29-P2b Cli-Mir-29-P2d Cmi-Mir-29-P2a-v1 Cmi-Mir-29-P2b Cmi-Mir-29-P2d Cpi-Mir-29-P2b Cpi-Mir-29-P2d Cpo-Mir-29-P2b Cpo-Mir-29-P2d Cte-Mir-29-P2 Dan-Mir-29-P2g Dan-Mir-29-P2h Dgr-Mir-29-P2 Dme-Mir-29-P2g Dme-Mir-29-P2h Dmo-Mir-29-P2g Dmo-Mir-29-P2h Dno-Mir-29-P2b Dno-Mir-29-P2d Dpu-Mir-29-P2 Dre-Mir-29-P2b1 Dre-Mir-29-P2d2 Dsi-Mir-29-P2g Dsi-Mir-29-P2h Dya-Mir-29-P2g Dya-Mir-29-P2h Eba-Mir-29-P2 Ebu-Mir-29-P2e Ebu-Mir-29-P2f Eca-Mir-29-P2b-v1 Eca-Mir-29-P2d7 Eca-Mir-29-P2d8 Efe-Mir-29-P2k Efe-Mir-29-P2l Esc-Mir-29-P2 Ete-Mir-29-P2b Ete-Mir-29-P2d Gga-Mir-29-P2b Gga-Mir-29-P2d Gja-Mir-29-P2b Gja-Mir-29-P2d Gmo-Mir-29-P2b1 Gmo-Mir-29-P2d1 Gmo-Mir-29-P2d2 Gpa-Mir-29-P2g Gpa-Mir-29-P2h Gsp-Mir-29 Hme-Mir-29-P2h Hru-Mir-29-P2 Hsa-Mir-29-P2b Hsa-Mir-29-P2d Laf-Mir-29-P2b Laf-Mir-29-P2d Lan-Mir-29-P2i Lan-Mir-29-P2j Lch-Mir-29-P2a Lch-Mir-29-P2b Lch-Mir-29-P2d Lgi-Mir-29-P2 Lhy-Mir-29-P2 Llo-Mir-29-P2 Loc-Mir-29-P2a Loc-Mir-29-P2b Loc-Mir-29-P2d-v1 Mal-Mir-29-P2b1-v1 Mal-Mir-29-P2d1 Mal-Mir-29-P2d2 Mdo-Mir-29-P2b Mdo-Mir-29-P2d Mgi-Mir-29-P2 Mml-Mir-29-P2b Mml-Mir-29-P2d Mmr-Mir-29-P2b-v1 Mmr-Mir-29-P2d Mmu-Mir-29-P2b Mmu-Mir-29-P2d Mom-Mir-29-P2 Mun-Mir-29-P2b Mun-Mir-29-P2d Neu-Mir-29-P2b Neu-Mir-29-P2d Npo-Mir-29-P2 Oan-Mir-29-P2b Oan-Mir-29-P2d Obi-Mir-29-P2 Ocu-Mir-29-P2b Ocu-Mir-29-P2d Ofu-Mir-29-P2 Ovu-Mir-29-P2 Pab-Mir-29-P2b Pab-Mir-29-P2d Pau-Mir-29-P2 Pbv-Mir-29-P2b Pbv-Mir-29-P2d Pcr-Mir-29-P2 Pdu-Mir-29-P2 Pfl-Mir-29-P2 Pma-Mir-29-P2o1 Pma-Mir-29-P2o2 Pmi-Mir-29-P2 Pve-Mir-29-P2 Rno-Mir-29-P2b Rno-Mir-29-P2d5 Rno-Mir-29-P2d6 Rph-Mir-29-P2 Sha-Mir-29-P2b Sha-Mir-29-P2d Sko-Mir-29-P2 Sme-Mir-29-o2 Snu-Mir-29-P2q Snu-Mir-29-P2r Spt-Mir-29-P2b Spt-Mir-29-P2d Spu-Mir-29-P2 Sro-Mir-29-P2p1 Sro-Mir-29-P2p2 Sto-Mir-29-P2b Sto-Mir-29-P2d Tca-Mir-29-P2g Tca-Mir-29-P2h Tgu-Mir-29-P2b Tgu-Mir-29-P2d Tni-Mir-29-P2b1 Tni-Mir-29-P2d1 Tni-Mir-29-P2d2 War-Mir-29-P2 Xbo-Mir-29-P2 Xla-Mir-29-P2b3 Xla-Mir-29-P2b4 Xla-Mir-29-P2d3 Xla-Mir-29-P2d4 Xtr-Mir-29-P2b Xtr-Mir-29-P2d

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(DMA_ASM399081)

NC_046175.1: 6286592-6286666 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P2)

Mir-965 NC_046175.1: 6247768-6247831 [-] Ensembl
Mir-36 NC_046175.1: 6285796-6285856 [-] Ensembl
Mir-279-P1d NC_046175.1: 6285937-6286000 [-] Ensembl
Mir-12608 NC_046175.1: 6286446-6286507 [-] Ensembl
Mir-29-P2 NC_046175.1: 6286592-6286666 [-] Ensembl
Mir-2-P5 NC_046175.1: 6286723-6286816 [-] Ensembl
Mir-9-P9 NC_046175.1: 6286883-6286941 [-] Ensembl
Mir-279-P1c NC_046175.1: 6287015-6287090 [-] Ensembl

Seed

CUGAGUC

Precursor
(pre-Mir +30nt flank)

ACAGGCAAGUUAAGCACACAGCCCCCCAGUGCUGAGUCUUGUGGUUGAUGUGCUAGAUAUUUUAGCUUCAACUCUCGGUUGCAUAGCACCACGGGAUUCAGCCGCUGGUGCGCCGUUGAUUUUUUUUUUUUUUUU

Get precursor sequence

Structure

        10          20        30         40        50        60       
ACAGGCAAGUUAAGCAC--  A  CCC     -|              UGA     UAGAUAUUUUAGC 
                   AC GC   CCAGU GCUGAGUCUUGUGGU   UGUGC             \
                   UG CG   GGUCG CGACUUAGGGCACCA   AUACG             U
UUUUUUUUUUUUUUUUAGU  C  CGU     C^              CG-     UUGGCUCUCAACU 
   130       120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

01	02	03	04	05	06	07	08	09	10	11	12	13	14

Mature sequence

Dma-Mir-29-P2_5p

mirBase accession

None

Sequence

0- GCUGAGUCUUGUGGUUGAUGUGC -23

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Star sequence

Dma-Mir-29-P2_3p*

mirBase accession

None

Sequence

52- AUAGCACCACGGGAUUCAGCCGC -75

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