MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-29-P2d

Family name MIR-29 (all species)
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-29c
Paralogues Gga-Mir-29-P1b-v1  Gga-Mir-29-P1d-v1  Gga-Mir-29-P2b 
Orthologues Aca-Mir-29-P2d  Agr-Mir-29-P2  Ami-Mir-29-P2d  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Bta-Mir-29-P2d7  Bta-Mir-29-P2d8  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cfa-Mir-29-P2d7  Cfa-Mir-29-P2d8  Cja-Mir-29-P2d  Cli-Mir-29-P2d  Cmi-Mir-29-P2d  Cpi-Mir-29-P2d  Cpo-Mir-29-P2d  Cte-Mir-29-P2  Dgr-Mir-29-P2  Dma-Mir-29-P2  Dno-Mir-29-P2d  Dpu-Mir-29-P2  Dre-Mir-29-P2d2  Eba-Mir-29-P2  Eca-Mir-29-P2d7  Eca-Mir-29-P2d8  Esc-Mir-29-P2  Ete-Mir-29-P2d  Gja-Mir-29-P2d  Gmo-Mir-29-P2d1  Gmo-Mir-29-P2d2  Gsp-Mir-29  Hru-Mir-29-P2  Hsa-Mir-29-P2d  Laf-Mir-29-P2d  Lch-Mir-29-P2d  Lgi-Mir-29-P2  Lhy-Mir-29-P2  Llo-Mir-29-P2  Loc-Mir-29-P2d-v1  Mal-Mir-29-P2d1  Mal-Mir-29-P2d2  Mdo-Mir-29-P2d  Mgi-Mir-29-P2  Mml-Mir-29-P2d  Mmr-Mir-29-P2d  Mmu-Mir-29-P2d  Mom-Mir-29-P2  Mun-Mir-29-P2d  Neu-Mir-29-P2d  Npo-Mir-29-P2  Oan-Mir-29-P2d  Obi-Mir-29-P2  Ocu-Mir-29-P2d  Ofu-Mir-29-P2  Ovu-Mir-29-P2  Pab-Mir-29-P2d  Pau-Mir-29-P2  Pbv-Mir-29-P2d  Pcr-Mir-29-P2  Pdu-Mir-29-P2  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Pve-Mir-29-P2  Rno-Mir-29-P2d5  Rno-Mir-29-P2d6  Rph-Mir-29-P2  Sha-Mir-29-P2d  Sko-Mir-29-P2  Sme-Mir-29-o2  Spt-Mir-29-P2d  Spu-Mir-29-P2  Sto-Mir-29-P2d  Tgu-Mir-29-P2d  Tni-Mir-29-P2d1  Tni-Mir-29-P2d2  War-Mir-29-P2  Xbo-Mir-29-P2  Xla-Mir-29-P2d3  Xla-Mir-29-P2d4  Xtr-Mir-29-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(Gallus_gallus.GRCg6a)		 26: 2699258-2699317 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P2d)		 Mir-29-P2d 26: 2699258-2699317 [-] UCSC Ensembl
Mir-29-P1d-v1 26: 2700163-2700226 [-] UCSC Ensembl
Mir-29-P1d-v2 26: 2700164-2700225 [-] UCSC Ensembl
Seed AGCACCA
Precursor
(pre-Mir +30nt flank)		 
GAGCCAGAAAAAUGUCUCUUACACAGGCUGACCGAUUUCUCUUGGUGUUCAGAGUCUCAGUUUCUGUCUAGCACCAUUUGAAAUCGGUUAUGAUGUAGGGGGAAAAGCAACAAUAAUGGA
Get precursor sequence
Structure
        10            20         30        40        50          
GAGCCAGAAAAAUGUCU----      -| GGC           UCU       C   GUCUCA 
                     CUUACA CA   UGACCGAUUUC   UGGUGUU AGA      \
                     GGAUGU GU   AUUGGCUAAAG   ACCACGA UCU      G
AGGUAAUAACAACGAAAAGGG      A^ ---           UUU       -   GUCUUU 
.       110       100           90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-29-P2d_5p*
mirBase accessionMIMAT0026544
Sequence 
0- ACCGAUUUCUCUUGGUGUUCAGA -23
Get sequence
Proposed targets TargetScanVert: gga-miR-29c-5p
miRDB: MIMAT0026544
Mature sequence

Gga-Mir-29-P2d_3p
mirBase accessionMIMAT0001183
Sequence 
38- UAGCACCAUUUGAAAUCGGUUA -60
Get sequence
Proposed targets TargetScanVert: gga-miR-29c-3p
miRDB: MIMAT0001183