Mir-29-P2d3

MirGeneDB ID

Xla-Mir-29-P2d3

Family name

MIR-29 (all species)

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-29-P1b3 Xla-Mir-29-P1b4 Xla-Mir-29-P1d3 Xla-Mir-29-P1d4 Xla-Mir-29-P2b3 Xla-Mir-29-P2b4 Xla-Mir-29-P2d4

Orthologues

Aca-Mir-29-P2d Agr-Mir-29-P2 Ami-Mir-29-P2d Asu-Mir-29-P2 Bfl-Mir-29-P2 Bla-Mir-29-P2 Cbr-Mir-29-P2 Cel-Mir-29-P2 Cja-Mir-29-P2d Cli-Mir-29-P2d Cmi-Mir-29-P2d Cpi-Mir-29-P2d Cpo-Mir-29-P2d Cte-Mir-29-P2 Dgr-Mir-29-P2 Dma-Mir-29-P2 Dno-Mir-29-P2d Dpu-Mir-29-P2 Eba-Mir-29-P2 Esc-Mir-29-P2 Ete-Mir-29-P2d Gga-Mir-29-P2d Gja-Mir-29-P2d Gsp-Mir-29 Hru-Mir-29-P2 Hsa-Mir-29-P2d Laf-Mir-29-P2d Lch-Mir-29-P2d Lgi-Mir-29-P2 Lhy-Mir-29-P2 Llo-Mir-29-P2 Loc-Mir-29-P2d-v1 Mdo-Mir-29-P2d Mgi-Mir-29-P2 Mml-Mir-29-P2d Mmr-Mir-29-P2d Mmu-Mir-29-P2d Mom-Mir-29-P2 Mun-Mir-29-P2d Neu-Mir-29-P2d Npo-Mir-29-P2 Oan-Mir-29-P2d Obi-Mir-29-P2 Ocu-Mir-29-P2d Ofu-Mir-29-P2 Ovu-Mir-29-P2 Pab-Mir-29-P2d Pau-Mir-29-P2 Pbv-Mir-29-P2d Pcr-Mir-29-P2 Pdu-Mir-29-P2 Pfl-Mir-29-P2 Pmi-Mir-29-P2 Pve-Mir-29-P2 Rph-Mir-29-P2 Sha-Mir-29-P2d Sko-Mir-29-P2 Sme-Mir-29-o2 Spt-Mir-29-P2d Spu-Mir-29-P2 Sto-Mir-29-P2d Tgu-Mir-29-P2d War-Mir-29-P2 Xbo-Mir-29-P2 Xtr-Mir-29-P2d

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030726.1: 51883586-51883646 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P2d3)

Mir-29-P1d3 NC_030726.1: 51880967-51881031 [+] UCSC Ensembl
Mir-29-P2d3 NC_030726.1: 51883586-51883646 [+] UCSC Ensembl

Seed

AGCACCA

Precursor
(pre-Mir +30nt flank)

CUCAUAGAAAAAGGUCCCUUAAACAGGAUGACCGAUCUCUCUUGGUGUUUAGAGGCUUGGGUCUUCAUCUAGCACCAUUUGAAAUCGGUUAUUAUGUAAGGUGAAUGGCAACAUAGCUGCA

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Structure

        10            20        30        40        50        60
CUCAUAGAAAAAGGUCC----|   AACAG          C  UCU       U   GGCUUG 
                     CUUA     GAUGACCGAU UC   UGGUGUU AGA      G
                     GAAU     UUAUUGGCUA AG   ACCACGA UCU      G
ACGUCGAUACAACGGUAAGUG^   GUA--          A  UUU       -   ACUUCU 
 .       110       100          90        80         70

Deep sequencing

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Comment

There is a second Drosha cut -2 on the 5p arm.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Star sequence

Xla-Mir-29-P2d3_5p*

mirBase accession

None

Sequence

0- ACCGAUCUCUCUUGGUGUUUAGA -23

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Mature sequence

Xla-Mir-29-P2d3_3p

mirBase accession

None

Sequence

39- UAGCACCAUUUGAAAUCGGUUA -61

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