Mir-29-P2d3

MirGeneDB ID

Xla-Mir-29-P2d3

Family name

MIR-29 (all species)

Seed

AGCACCA

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-29-P1b3 Xla-Mir-29-P1b4 Xla-Mir-29-P1d3 Xla-Mir-29-P1d4 Xla-Mir-29-P2b3 Xla-Mir-29-P2b4 Xla-Mir-29-P2d4

Orthologues

Aca-Mir-29-P2d Ami-Mir-29-P2d Asu-Mir-29-P2 Bfl-Mir-29-P2 Bla-Mir-29-P2 Cbr-Mir-29-P2 Cel-Mir-29-P2 Cgi-Mir-29-P2 Cin-Mir-29-P2 Cli-Mir-29-P2d Cmi-Mir-29-P2d Cpi-Mir-29-P2d Cpo-Mir-29-P2d Csc-Mir-29-P2 Cte-Mir-29-P2 Dno-Mir-29-P2d Esc-Mir-29-P2 Ete-Mir-29-P2d Gga-Mir-29-P2d Gja-Mir-29-P2d Hsa-Mir-29-P2d Isc-Mir-29-P2 Lch-Mir-29-P2d Lgi-Mir-29-P2 Loc-Mir-29-P2d-v1 Loc-Mir-29-P2d-v2 Mdo-Mir-29-P2d Mml-Mir-29-P2d Mmu-Mir-29-P2d Mun-Mir-29-P2d Npo-Mir-29-P2 Oan-Mir-29-P2d Obi-Mir-29-P2 Ocu-Mir-29-P2d Ovu-Mir-29-P2 Pbv-Mir-29-P2d Pfl-Mir-29-P2 Pmi-Mir-29-P2 Sha-Mir-29-P2d Sko-Mir-29-P2 Spt-Mir-29-P2d Spu-Mir-29-P2 Sto-Mir-29-P2d Tgu-Mir-29-P2d Xbo-Mir-29-P2 Xtr-Mir-29-P2d

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030726.1: 51883586-51883646 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCAUAGAAAAAGGUCCCUUAAACAGGAUGACCGAUCUCUCUUGGUGUUUAGAGGCUUGGGUCUUCAUCUAGCACCAUUUGAAAUCGGUUAUUAUGUAAGGUGAAUGGCAACAUAGCUGCA

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Structure

        10            20        30        40        50        60
CUCAUAGAAAAAGGUCC----|   AACAG          C  UCU       U   GGCUUG 
                     CUUA     GAUGACCGAU UC   UGGUGUU AGA      G
                     GAAU     UUAUUGGCUA AG   ACCACGA UCU      G
ACGUCGAUACAACGGUAAGUG^   GUA--          A  UUU       -   ACUUCU 
 .       110       100          90        80         70

Deep sequencing

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Comment

There is a second Drosha cut -2 on the 5p arm.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Eg	He	Re	St	St	St	St

Star sequence

Xla-Mir-29-P2d3_5p*

mirBase accession

None

Sequence

0- ACCGAUCUCUCUUGGUGUUUAGA -23

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Mature sequence

Xla-Mir-29-P2d3_3p

mirBase accession

None

Sequence

39- UAGCACCAUUUGAAAUCGGUUA -61

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