Mir-29-P1d3

MirGeneDB ID

Xla-Mir-29-P1d3

Family name

MIR-29 (all species)

Seed

CUGGUUU

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-29b

Paralogues

Xla-Mir-29-P1b3 Xla-Mir-29-P1b4 Xla-Mir-29-P1d4 Xla-Mir-29-P2b3 Xla-Mir-29-P2b4 Xla-Mir-29-P2d3 Xla-Mir-29-P2d4

Orthologues

Aae-Mir-29-P1 Aca-Mir-29-P1d-v1 Aca-Mir-29-P1d-v2 Ami-Mir-29-P1d-v1 Ami-Mir-29-P1d-v2 Asu-Mir-29-P1 Bfl-Mir-29-P1 Bla-Mir-29-P1 Cbr-Mir-29-P1 Cel-Mir-29-P1 Cfa-Mir-29-P1d-v1 Cfa-Mir-29-P1d-v2 Cgi-Mir-29-P1 Cli-Mir-29-P1d-v1 Cli-Mir-29-P1d-v2 Cmi-Mir-29-P1d Cpi-Mir-29-P1d-v1 Cpi-Mir-29-P1d-v2 Cpo-Mir-29-P1d-v1 Cpo-Mir-29-P1d-v2 Cte-Mir-29-P1 Dan-Mir-29-P1 Dme-Mir-29-P1 Dmo-Mir-29-P1 Dno-Mir-29-P1d-v1 Dno-Mir-29-P1d-v2 Dsi-Mir-29-P1 Dya-Mir-29-P1 Esc-Mir-29-P1 Ete-Mir-29-P1d-v1 Ete-Mir-29-P1d-v2 Gga-Mir-29-P1d-v1 Gga-Mir-29-P1d-v2 Gja-Mir-29-P1d-v1 Gja-Mir-29-P1d-v2 Hme-Mir-29-P1 Hsa-Mir-29-P1d-v1 Hsa-Mir-29-P1d-v2 Lch-Mir-29-P1d Loc-Mir-29-P1d Mdo-Mir-29-P1d-v1 Mdo-Mir-29-P1d-v2 Mml-Mir-29-P1d-v1 Mml-Mir-29-P1d-v2 Mmu-Mir-29-P1d-v1 Mmu-Mir-29-P1d-v2 Mun-Mir-29-P1d-v1 Mun-Mir-29-P1d-v2 Npo-Mir-29-P1 Oan-Mir-29-P1d-v1 Oan-Mir-29-P1d-v2 Obi-Mir-29-P1 Ocu-Mir-29-P1d-v1 Ocu-Mir-29-P1d-v2 Ovu-Mir-29-P1 Pbv-Mir-29-P1d-v1 Pbv-Mir-29-P1d-v2 Pfl-Mir-29-P1 Pmi-Mir-29-P1 Sha-Mir-29-P1d-v1 Sha-Mir-29-P1d-v2 Sko-Mir-29-P1 Spt-Mir-29-P1d Spu-Mir-29-P1 Sto-Mir-29-P1d Tca-Mir-29-P1 Tgu-Mir-29-P1d-v1 Tgu-Mir-29-P1d-v2 Xbo-Mir-29-P1 Xtr-Mir-29-P1d

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030726.1: 51880967-51881031 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAUAACAAAUAUGAAAAUCUUUUCCCGGAAGCUGGUUUCAUAUGGUGACUUAGAUUUAUCCAUCUCUGUUUCUAGCACCAUUUGAAAUCAGUGUUCUAGGAGUAAGAAUAUCAGCCUUUGCCAGA

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Structure

        10         20         30         40        50        60  
CAUAACAAAUAUGAAAA-    -    CG   -|         U      A  U   UUUAUCC 
                  UCUU UUCC  GAA GCUGGUUUCA AUGGUG CU AGA       A
                  AGAA GAGG  CUU UGACUAAAGU UACCAC GA UCU       U
AGACCGUUUCCGACUAUA    U    AU   G^         U      -  -   UUGUCUC 
   120       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Eg	He	Re	St	St	St	St

Mature sequence

Xla-Mir-29-P1d3_5p

mirBase accession

MIMAT0046562

Sequence

0- GCUGGUUUCAUAUGGUGACUUAGA -24

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Star sequence

Xla-Mir-29-P1d3_3p*

mirBase accession

MIMAT0046563

Sequence

42- UAGCACCAUUUGAAAUCAGUGUU -65

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