Mir-29-P1d3

MirGeneDB ID

Xla-Mir-29-P1d3

Family name

MIR-29 (all species)

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-29b

Paralogues

Xla-Mir-29-P1b3 Xla-Mir-29-P1b4 Xla-Mir-29-P1d4 Xla-Mir-29-P2b3 Xla-Mir-29-P2b4 Xla-Mir-29-P2d3 Xla-Mir-29-P2d4

Orthologues

Aae-Mir-29-P1 Aca-Mir-29-P1d-v1 Aga-Mir-29-P1 Agr-Mir-29-P1 Ami-Mir-29-P1d-v1 Asu-Mir-29-P1 Bfl-Mir-29-P1 Bla-Mir-29-P1 Cbr-Mir-29-P1 Cel-Mir-29-P1 Cfa-Mir-29-P1d-v1 Cin-Mir-29-o1 Cja-Mir-29-P1d-v1 Cli-Mir-29-P1d-v1 Cmi-Mir-29-P1d Cpi-Mir-29-P1d-v1 Cpo-Mir-29-P1d-v1 Csc-Mir-29-P1 Cte-Mir-29-P1 Dan-Mir-29-P1 Dgr-Mir-29-P1 Dlo-Mir-29-P1 Dma-Mir-29-P1 Dme-Mir-29-P1 Dmo-Mir-29-P1 Dno-Mir-29-P1d-v1 Dpu-Mir-29-P1 Dsi-Mir-29-P1 Dya-Mir-29-P1 Eba-Mir-29-P1 Eca-Mir-29-P1d-v1 Esc-Mir-29-P1 Ete-Mir-29-P1d-v1 Gga-Mir-29-P1d-v1 Gja-Mir-29-P1d-v1 Gpa-Mir-29-P1 Gsp-Mir-29 Hme-Mir-29-P1 Hru-Mir-29-P1 Hsa-Mir-29-P1d-v1 Isc-Mir-29-P1 Laf-Mir-29-P1d-v1 Lch-Mir-29-P1d Lhy-Mir-29-P1 Llo-Mir-29-P1 Loc-Mir-29-P1d Mdo-Mir-29-P1d-v1 Mgi-Mir-29-P1 Mml-Mir-29-P1d-v1 Mmr-Mir-29-P1d-v1 Mmu-Mir-29-P1d-v1 Mom-Mir-29-P1 Mun-Mir-29-P1d-v1 Npo-Mir-29-P1 Oan-Mir-29-P1d-v1 Obi-Mir-29-P1 Ocu-Mir-29-P1d-v1 Ofu-Mir-29-P1 Ovu-Mir-29-P1 Pab-Mir-29-P1d-v1 Pau-Mir-29-P1 Pbv-Mir-29-P1d-v1 Pcr-Mir-29-P1 Pdu-Mir-29-P1 Pfl-Mir-29-P1 Pmi-Mir-29-P1 Pve-Mir-29-P1 Rph-Mir-29-P1 Sha-Mir-29-P1d-v1 Sko-Mir-29-P1 Snu-Mir-29-P1 Spt-Mir-29-P1d Spu-Mir-29-P1 Sto-Mir-29-P1d Tca-Mir-29-P1 Tgu-Mir-29-P1d-v1 Tur-Mir-29-P1 War-Mir-29-P1 Xbo-Mir-29-P1 Xtr-Mir-29-P1d

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030726.1: 51880967-51881031 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P1d3)

Mir-29-P1d3 NC_030726.1: 51880967-51881031 [+] UCSC Ensembl
Mir-29-P2d3 NC_030726.1: 51883586-51883646 [+] UCSC Ensembl

Seed

CUGGUUU

Precursor
(pre-Mir +30nt flank)

CAUAACAAAUAUGAAAAUCUUUUCCCGGAAGCUGGUUUCAUAUGGUGACUUAGAUUUAUCCAUCUCUGUUUCUAGCACCAUUUGAAAUCAGUGUUCUAGGAGUAAGAAUAUCAGCCUUUGCCAGA

Get precursor sequence

Structure

        10         20         30         40        50        60  
CAUAACAAAUAUGAAAA-    -    CG   -|         U      A  U   UUUAUCC 
                  UCUU UUCC  GAA GCUGGUUUCA AUGGUG CU AGA       A
                  AGAA GAGG  CUU UGACUAAAGU UACCAC GA UCU       U
AGACCGUUUCCGACUAUA    U    AU   G^         U      -  -   UUGUCUC 
   120       110       100        90        80          70

Deep sequencing

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Em

Mature sequence

Xla-Mir-29-P1d3_5p

mirBase accession

MIMAT0046562

Sequence

0- GCUGGUUUCAUAUGGUGACUUAGA -24

Get sequence

Star sequence

Xla-Mir-29-P1d3_3p*

mirBase accession

MIMAT0046563

Sequence

42- UAGCACCAUUUGAAAUCAGUGUU -65

Get sequence