MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-29-P2b4

Family name MIR-29 (all species)
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-29-P1b3  Xla-Mir-29-P1b4  Xla-Mir-29-P1d3  Xla-Mir-29-P1d4  Xla-Mir-29-P2b3  Xla-Mir-29-P2d3  Xla-Mir-29-P2d4 
Orthologues Aca-Mir-29-P2b  Agr-Mir-29-P2  Ami-Mir-29-P2b  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Bta-Mir-29-P2b  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cfa-Mir-29-P2b  Cja-Mir-29-P2b  Cli-Mir-29-P2b  Cmi-Mir-29-P2b  Cpi-Mir-29-P2b  Cpo-Mir-29-P2b  Cte-Mir-29-P2  Dgr-Mir-29-P2  Dma-Mir-29-P2  Dno-Mir-29-P2b  Dpu-Mir-29-P2  Eba-Mir-29-P2  Eca-Mir-29-P2b-v1  Esc-Mir-29-P2  Ete-Mir-29-P2b  Gga-Mir-29-P2b  Gja-Mir-29-P2b  Gsp-Mir-29  Hru-Mir-29-P2  Hsa-Mir-29-P2b  Laf-Mir-29-P2b  Lch-Mir-29-P2b  Lgi-Mir-29-P2  Lhy-Mir-29-P2  Llo-Mir-29-P2  Loc-Mir-29-P2b  Mdo-Mir-29-P2b  Mgi-Mir-29-P2  Mml-Mir-29-P2b  Mmr-Mir-29-P2b-v1  Mmu-Mir-29-P2b  Mom-Mir-29-P2  Mun-Mir-29-P2b  Neu-Mir-29-P2b  Npo-Mir-29-P2  Oan-Mir-29-P2b  Obi-Mir-29-P2  Ocu-Mir-29-P2b  Ofu-Mir-29-P2  Ovu-Mir-29-P2  Pab-Mir-29-P2b  Pau-Mir-29-P2  Pbv-Mir-29-P2b  Pcr-Mir-29-P2  Pdu-Mir-29-P2  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Pve-Mir-29-P2  Rno-Mir-29-P2b  Rph-Mir-29-P2  Sha-Mir-29-P2b  Sko-Mir-29-P2  Sme-Mir-29-o2  Spt-Mir-29-P2b  Spu-Mir-29-P2  Sto-Mir-29-P2b  Tgu-Mir-29-P2b  War-Mir-29-P2  Xbo-Mir-29-P2  Xtr-Mir-29-P2b 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030729.1: 65235474-65235531 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P2b4)		 Mir-29-P1b4 NC_030729.1: 65233841-65233902 [+] UCSC Ensembl
Mir-29-P2b4 NC_030729.1: 65235474-65235531 [+] UCSC Ensembl
Seed AGCACCA
Precursor
(pre-Mir +30nt flank)		 
CAACGGAUCAUUGGGCCCUUUUAAAGGAUGACUGAUUUCUUCUGGUGUUCAGAGUCUUUUGUUUUCUAGCACCAUUUGAAAUCGGUUAUAAUGAUGGGGUAAAACUCAGCCUCAUCAC
Get precursor sequence
Structure
        10          20        30        40        50         
CAACGGAUCAUUGGGCC--|   UAAAGG            UUC       C   GUCUU 
                   CUUU      AUGACUGAUUUC   UGGUGUU AGA     \
                   GGGG      UAUUGGCUAAAG   ACCACGA UCU     U
CACUACUCCGACUCAAAAU^   UAGUAA            UUU       -   UUUGU 
      110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Eg Em Em He Ki Re St St
Star sequence

Xla-Mir-29-P2b4_5p*
mirBase accessionNone
Sequence 
0- ACUGAUUUCUUCUGGUGUUCAGA -23
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Mature sequence

Xla-Mir-29-P2b4_3p
mirBase accessionNone
Sequence 
36- UAGCACCAUUUGAAAUCGGUUA -58
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