Mir-29-P2b

MirGeneDB ID

Hsa-Mir-29-P2b

Family name

MIR-29 (all species)

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-29a

Paralogues

Hsa-Mir-29-P1b-v1 Hsa-Mir-29-P1d-v1 Hsa-Mir-29-P2d

Orthologues

Aca-Mir-29-P2b Agr-Mir-29-P2 Ami-Mir-29-P2b Asu-Mir-29-P2 Bfl-Mir-29-P2 Bla-Mir-29-P2 Bta-Mir-29-P2b Cbr-Mir-29-P2 Cel-Mir-29-P2 Cfa-Mir-29-P2b Cja-Mir-29-P2b Cli-Mir-29-P2b Cmi-Mir-29-P2b Cpi-Mir-29-P2b Cpo-Mir-29-P2b Cte-Mir-29-P2 Dgr-Mir-29-P2 Dma-Mir-29-P2 Dno-Mir-29-P2b Dpu-Mir-29-P2 Dre-Mir-29-P2b1 Eba-Mir-29-P2 Eca-Mir-29-P2b-v1 Esc-Mir-29-P2 Ete-Mir-29-P2b Gga-Mir-29-P2b Gja-Mir-29-P2b Gmo-Mir-29-P2b1 Gsp-Mir-29 Hru-Mir-29-P2 Laf-Mir-29-P2b Lch-Mir-29-P2b Lgi-Mir-29-P2 Lhy-Mir-29-P2 Llo-Mir-29-P2 Loc-Mir-29-P2b Mal-Mir-29-P2b1-v1 Mdo-Mir-29-P2b Mgi-Mir-29-P2 Mml-Mir-29-P2b Mmr-Mir-29-P2b-v1 Mmu-Mir-29-P2b Mom-Mir-29-P2 Mun-Mir-29-P2b Neu-Mir-29-P2b Npo-Mir-29-P2 Oan-Mir-29-P2b Obi-Mir-29-P2 Ocu-Mir-29-P2b Ofu-Mir-29-P2 Ovu-Mir-29-P2 Pab-Mir-29-P2b Pau-Mir-29-P2 Pbv-Mir-29-P2b Pcr-Mir-29-P2 Pdu-Mir-29-P2 Pfl-Mir-29-P2 Pmi-Mir-29-P2 Pve-Mir-29-P2 Rno-Mir-29-P2b Rph-Mir-29-P2 Sha-Mir-29-P2b Sko-Mir-29-P2 Sme-Mir-29-o2 Spt-Mir-29-P2b Spu-Mir-29-P2 Sto-Mir-29-P2b Tgu-Mir-29-P2b Tni-Mir-29-P2b1 War-Mir-29-P2 Xbo-Mir-29-P2 Xla-Mir-29-P2b3 Xla-Mir-29-P2b4 Xtr-Mir-29-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(hg38)

chr7: 130876748-130876807 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P2b)

Mir-29-P2b chr7: 130876748-130876807 [-] UCSC Ensembl
Mir-29-P1b-v1 chr7: 130877467-130877530 [-] UCSC Ensembl
Mir-29-P1b-v2 chr7: 130877468-130877529 [-] UCSC Ensembl

Seed

AGCACCA

Precursor
(pre-Mir +30nt flank)

UCACGACCUUCUGUGACCCCUUAGAGGAUGACUGAUUUCUUUUGGUGUUCAGAGUCAAUAUAAUUUUCUAGCACCAUCUGAAAUCGGUUAUAAUGAUUGGGGAAGAGCACCAUGAUGCUG

Get precursor sequence

Structure

        10         20         30        40        50          
UCACGACCUUCUGUGAC-    UAGAGG-|           UUU       C   GUCAAU 
                  CCCU       AUGACUGAUUUC   UGGUGUU AGA      \
                  GGGG       UAUUGGCUAAAG   ACCACGA UCU      A
GUCGUAGUACCACGAGAA    UUAGUAA^           UCU       -   UUUAAU 
.       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Star sequence

Hsa-Mir-29-P2b_5p*

mirBase accession

MIMAT0004503

Sequence

0- ACUGAUUUCUUUUGGUGUUCAGA -23

Get sequence

Proposed targets

microrna.org: MIMAT0004503
TargetScanVert: hsa-miR-29a-5p
TargetMiner: hsa-miR-29a-5p
miRDB: MIMAT0004503

Mature sequence

Hsa-Mir-29-P2b_3p

mirBase accession

MIMAT0000086

Sequence

38- UAGCACCAUCUGAAAUCGGUUA -60

Get sequence

Proposed targets

microrna.org: MIMAT0000086
TargetScanVert: hsa-miR-29a-3p
TargetMiner: hsa-miR-29a-3p
miRDB: MIMAT0000086