MirGeneDB 3.0
MirGeneDB ID

Mal-Mir-29-P2b1

Family name MIR-29 (all species)
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-29-P1b1-v1  Mal-Mir-29-P1b2-v1  Mal-Mir-29-P1d1  Mal-Mir-29-P1d2-v1  Mal-Mir-29-P2d1  Mal-Mir-29-P2d2 
Orthologues Aca-Mir-29-P2b  Agr-Mir-29-P2  Ami-Mir-29-P2b  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Bta-Mir-29-P2b  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cfa-Mir-29-P2b  Cja-Mir-29-P2b  Cli-Mir-29-P2b  Cmi-Mir-29-P2b  Cpi-Mir-29-P2b  Cpo-Mir-29-P2b  Cte-Mir-29-P2  Dgr-Mir-29-P2  Dma-Mir-29-P2  Dno-Mir-29-P2b  Dpu-Mir-29-P2  Dre-Mir-29-P2b1  Eba-Mir-29-P2  Eca-Mir-29-P2b-v1  Esc-Mir-29-P2  Ete-Mir-29-P2b  Gga-Mir-29-P2b  Gja-Mir-29-P2b  Gmo-Mir-29-P2b1  Gsp-Mir-29  Hru-Mir-29-P2  Hsa-Mir-29-P2b  Laf-Mir-29-P2b  Lch-Mir-29-P2b  Lgi-Mir-29-P2  Lhy-Mir-29-P2  Llo-Mir-29-P2  Loc-Mir-29-P2b  Mdo-Mir-29-P2b  Mgi-Mir-29-P2  Mml-Mir-29-P2b  Mmr-Mir-29-P2b-v1  Mmu-Mir-29-P2b  Mom-Mir-29-P2  Mun-Mir-29-P2b  Neu-Mir-29-P2b  Npo-Mir-29-P2  Oan-Mir-29-P2b  Obi-Mir-29-P2  Ocu-Mir-29-P2b  Ofu-Mir-29-P2  Ovu-Mir-29-P2  Pab-Mir-29-P2b  Pau-Mir-29-P2  Pbv-Mir-29-P2b  Pcr-Mir-29-P2  Pdu-Mir-29-P2  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Pve-Mir-29-P2  Rno-Mir-29-P2b  Rph-Mir-29-P2  Sha-Mir-29-P2b  Sko-Mir-29-P2  Sme-Mir-29-o2  Spt-Mir-29-P2b  Spu-Mir-29-P2  Sto-Mir-29-P2b  Tgu-Mir-29-P2b  Tni-Mir-29-P2b1  War-Mir-29-P2  Xbo-Mir-29-P2  Xtr-Mir-29-P2b 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884739.1: 6343485-6343545 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P2b1-v1)		 Mir-29-P2b1-v1 KV884739.1: 6343485-6343545 [-] UCSC Ensembl
Mir-29-P2b1-v2 KV884739.1: 6343485-6343545 [-] UCSC Ensembl
Mir-29-P1b1-v1 KV884739.1: 6343654-6343716 [-] UCSC Ensembl
Mir-29-P1b1-v2 KV884739.1: 6343654-6343716 [-] UCSC Ensembl
Variant

Mal-Mir-29-P2b1-v1
Seed AGCACCA
Precursor
(pre-Mir +30nt flank)		 
CUCCUACUCUUCUUUCACCACCAAAAGAUAACUGAUUUCUUCUGGUGCUUAGAGCUCACUACAGCCUUCUAGCACCAUUUGAAAUCGGUUAUAAAACUGUGGAUCAGUGCGUCUGUCAAUC
Get precursor sequence
Structure
        10          20        30        40        50        60
CUCCUACUCUUCUUUCA--|   CAAAAG            UUC       U   GCUCAC 
                   CCAC      AUAACUGAUUUC   UGGUGCU AGA      U
                   GGUG      UAUUGGCUAAAG   ACCACGA UCU      A
CUAACUGUCUGCGUGACUA^   UCAAAA            UUU       -   UCCGAC 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Fe Fe In Ma Ma
Star sequence

Mal-Mir-29-P2b1-v1_5p*
mirBase accessionNone
Sequence 
0- ACUGAUUUCUUCUGGUGCUUAGA -23
Get sequence
Mature sequence

Mal-Mir-29-P2b1-v1_3p
mirBase accessionNone
Sequence 
39- UAGCACCAUUUGAAAUCGGUUA -61
Get sequence
Variant

Mal-Mir-29-P2b1-v2
Seed UAGCACC
Precursor
(pre-Mir +30nt flank)		 
CUCCUACUCUUCUUUCACCACCAAAAGAUAACUGAUUUCUUCUGGUGCUUAGAGCUCACUACAGCCUUCUAGCACCAUUUGAAAUCGGUUAUAAAACUGUGGAUCAGUGCGUCUGUCAAUC
Get precursor sequence
Structure
        10          20        30        40        50        60
CUCCUACUCUUCUUUCA--|   CAAAAG            UUC       U   GCUCAC 
                   CCAC      AUAACUGAUUUC   UGGUGCU AGA      U
                   GGUG      UAUUGGCUAAAG   ACCACGA UCU      A
CUAACUGUCUGCGUGACUA^   UCAAAA            UUU       -   UCCGAC 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Fe Fe In Ma Ma
Star sequence

Mal-Mir-29-P2b1-v2_5p*
mirBase accessionNone
Sequence 
0- ACUGAUUUCUUCUGGUGCUUAGA -23
Get sequence
Mature sequence

Mal-Mir-29-P2b1-v2_3p
mirBase accessionNone
Sequence 
38- CUAGCACCAUUUGAAAUCGGUUA -61
Get sequence