MirGeneDB 3.0

MirGeneDB ID

Loc-Mir-29-P2b

Family name MIR-29 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-29-P1b-v1  Loc-Mir-29-P1d  Loc-Mir-29-P2a  Loc-Mir-29-P2d-v1 
Orthologues Aca-Mir-29-P2b  Agr-Mir-29-P2  Ami-Mir-29-P2b  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Bta-Mir-29-P2b  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cfa-Mir-29-P2b  Cja-Mir-29-P2b  Cli-Mir-29-P2b  Cmi-Mir-29-P2b  Cpi-Mir-29-P2b  Cpo-Mir-29-P2b  Cte-Mir-29-P2  Dgr-Mir-29-P2  Dma-Mir-29-P2  Dno-Mir-29-P2b  Dpu-Mir-29-P2  Dre-Mir-29-P2b1  Eba-Mir-29-P2  Eca-Mir-29-P2b-v1  Esc-Mir-29-P2  Ete-Mir-29-P2b  Gga-Mir-29-P2b  Gja-Mir-29-P2b  Gmo-Mir-29-P2b1  Gsp-Mir-29  Hru-Mir-29-P2  Hsa-Mir-29-P2b  Laf-Mir-29-P2b  Lch-Mir-29-P2b  Lgi-Mir-29-P2  Lhy-Mir-29-P2  Llo-Mir-29-P2  Mal-Mir-29-P2b1-v1  Mdo-Mir-29-P2b  Mgi-Mir-29-P2  Mml-Mir-29-P2b  Mmr-Mir-29-P2b-v1  Mmu-Mir-29-P2b  Mom-Mir-29-P2  Mun-Mir-29-P2b  Neu-Mir-29-P2b  Npo-Mir-29-P2  Oan-Mir-29-P2b  Obi-Mir-29-P2  Ocu-Mir-29-P2b  Ofu-Mir-29-P2  Ovu-Mir-29-P2  Pab-Mir-29-P2b  Pau-Mir-29-P2  Pbv-Mir-29-P2b  Pcr-Mir-29-P2  Pdu-Mir-29-P2  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Pve-Mir-29-P2  Rno-Mir-29-P2b  Rph-Mir-29-P2  Sha-Mir-29-P2b  Sko-Mir-29-P2  Sme-Mir-29-o2  Spt-Mir-29-P2b  Spu-Mir-29-P2  Sto-Mir-29-P2b  Tgu-Mir-29-P2b  Tni-Mir-29-P2b1  War-Mir-29-P2  Xbo-Mir-29-P2  Xla-Mir-29-P2b3  Xla-Mir-29-P2b4  Xtr-Mir-29-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LepOcu1)
LG8: 12633711-12633770 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P2b)
Mir-29-P1b-v1 LG8: 12632835-12632898 [+] Ensembl
Mir-29-P1b-v2 LG8: 12632836-12632897 [+] Ensembl
Mir-29-P2b LG8: 12633711-12633770 [+] Ensembl
Seed AGCACCA
Precursor
(pre-Mir +30nt flank)
UUUCCCCAGUUUCACCCCUUUUGAAGGAUGACUGAUUUCCUCUGGUGUUCAGAGUCCACAAUGUUUUCUAGCACCAUUUGAAAUCGGUUAUAAUGACAGGGGAUAAAUUCAUCUGCUUGA
Get precursor sequence
Structure
        10         20         30        40        50          
UUUCCCCAGUUUCACCC-      AAGG-|           CUC       C   GUCCAC 
                  CUUUUG     AUGACUGAUUUC   UGGUGUU AGA      \
                  GGGGAC     UAUUGGCUAAAG   ACCACGA UCU      A
AGUUCGUCUACUUAAAUA      AGUAA^           UUU       -   UUUGUA 
.       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-29-P2b_5p*

mirBase accessionNone
Sequence
0- ACUGAUUUCCUCUGGUGUUCAGA -23
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Mature sequence

Loc-Mir-29-P2b_3p

mirBase accessionNone
Sequence
38- UAGCACCAUUUGAAAUCGGUUA -60
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