MirGeneDB 2.1

MirGeneDB ID

Xla-Mir-29-P2b3

Family name MIR-29 (all species)
Seed AGCACCA
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-29-P1b3  Xla-Mir-29-P1b4  Xla-Mir-29-P1d3  Xla-Mir-29-P1d4  Xla-Mir-29-P2b4  Xla-Mir-29-P2d3  Xla-Mir-29-P2d4 
Orthologues Aca-Mir-29-P2b  Ami-Mir-29-P2b  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Bta-Mir-29-P2b  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cfa-Mir-29-P2b  Cgi-Mir-29-P2  Cin-Mir-29-P2  Cli-Mir-29-P2b  Cmi-Mir-29-P2b  Cpi-Mir-29-P2b  Cpo-Mir-29-P2b  Csc-Mir-29-P2  Cte-Mir-29-P2  Dno-Mir-29-P2b  Esc-Mir-29-P2  Ete-Mir-29-P2b  Gga-Mir-29-P2b  Gja-Mir-29-P2b  Hsa-Mir-29-P2b  Isc-Mir-29-P2  Lch-Mir-29-P2b  Lgi-Mir-29-P2  Loc-Mir-29-P2b  Mdo-Mir-29-P2b  Mml-Mir-29-P2b  Mmu-Mir-29-P2b  Mun-Mir-29-P2b  Npo-Mir-29-P2  Oan-Mir-29-P2b  Obi-Mir-29-P2  Ocu-Mir-29-P2b  Ovu-Mir-29-P2  Pbv-Mir-29-P2b  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Rno-Mir-29-P2b  Sha-Mir-29-P2b  Sko-Mir-29-P2  Spt-Mir-29-P2b  Spu-Mir-29-P2  Sto-Mir-29-P2b  Tgu-Mir-29-P2b  Xbo-Mir-29-P2  Xtr-Mir-29-P2b 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)
NC_030728.1: 75322318-75322375 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAACGGAUCAUUGCGCCCUUUUAAAGGAUGACCGAUUUCUUCUGGUGUUCAGAGUCUUUUGUUUUCUAGCACCAUUUGAAAUCGGUUAUAAUGAUGGGGCAAAUAACUCAGCCUUCUC
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Structure
        10          20        30        40        50         
CAACGGAUCAUUGCGCC--|   UAAAGG            UUC       C   GUCUU 
                   CUUU      AUGACCGAUUUC   UGGUGUU AGA     \
                   GGGG      UAUUGGCUAAAG   ACCACGA UCU     U
CUCUUCCGACUCAAUAAAC^   UAGUAA            UUU       -   UUUGU 
      110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Eg He Re St St St St
Star sequence

Xla-Mir-29-P2b3_5p*

mirBase accessionNone
Sequence
0- ACCGAUUUCUUCUGGUGUUCAGA -23
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Mature sequence

Xla-Mir-29-P2b3_3p

mirBase accessionNone
Sequence
36- UAGCACCAUUUGAAAUCGGUUA -58
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