Mir-29-P1b4

MirGeneDB ID

Xla-Mir-29-P1b4

Family name

MIR-29 (all species)

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-29-P1b3 Xla-Mir-29-P1d3 Xla-Mir-29-P1d4 Xla-Mir-29-P2b3 Xla-Mir-29-P2b4 Xla-Mir-29-P2d3 Xla-Mir-29-P2d4

Orthologues

Aae-Mir-29-P1 Aca-Mir-29-P1b-v1 Aga-Mir-29-P1 Agr-Mir-29-P1 Ami-Mir-29-P1b-v1 Asu-Mir-29-P1 Bfl-Mir-29-P1 Bla-Mir-29-P1 Bta-Mir-29-P1b-v1 Cbr-Mir-29-P1 Cel-Mir-29-P1 Cfa-Mir-29-P1b-v1 Cin-Mir-29-o1 Cja-Mir-29-P1b-v1 Cli-Mir-29-P1b-v1 Cmi-Mir-29-P1b Cpi-Mir-29-P1b-v1 Cpo-Mir-29-P1b-v1 Csc-Mir-29-P1 Cte-Mir-29-P1 Dan-Mir-29-P1 Dgr-Mir-29-P1 Dlo-Mir-29-P1 Dma-Mir-29-P1 Dme-Mir-29-P1 Dmo-Mir-29-P1 Dno-Mir-29-P1b-v1 Dpu-Mir-29-P1 Dsi-Mir-29-P1 Dya-Mir-29-P1 Eba-Mir-29-P1 Eca-Mir-29-P1b-v1 Esc-Mir-29-P1 Ete-Mir-29-P1b-v1 Gga-Mir-29-P1b-v1 Gja-Mir-29-P1b-v1 Gpa-Mir-29-P1 Gsp-Mir-29 Hme-Mir-29-P1 Hru-Mir-29-P1 Hsa-Mir-29-P1b-v1 Isc-Mir-29-P1 Laf-Mir-29-P1b-v1 Lch-Mir-29-P1b Lhy-Mir-29-P1 Llo-Mir-29-P1 Loc-Mir-29-P1b-v1 Mdo-Mir-29-P1b-v1 Mgi-Mir-29-P1 Mml-Mir-29-P1b-v1 Mmr-Mir-29-P1b-v1 Mmu-Mir-29-P1b-v1 Mom-Mir-29-P1 Mun-Mir-29-P1b Neu-Mir-29-P1b-v1 Npo-Mir-29-P1 Oan-Mir-29-P1b-v1 Obi-Mir-29-P1 Ocu-Mir-29-P1b-v1 Ofu-Mir-29-P1 Ovu-Mir-29-P1 Pab-Mir-29-P1b-v1 Pau-Mir-29-P1 Pbv-Mir-29-P1b-v1 Pcr-Mir-29-P1 Pdu-Mir-29-P1 Pfl-Mir-29-P1 Pmi-Mir-29-P1 Pve-Mir-29-P1 Rno-Mir-29-P1b-v1 Rph-Mir-29-P1 Sha-Mir-29-P1b-v1 Sko-Mir-29-P1 Snu-Mir-29-P1 Spt-Mir-29-P1b Spu-Mir-29-P1 Sto-Mir-29-P1b Tca-Mir-29-P1 Tgu-Mir-29-P1b-v1 Tur-Mir-29-P1 War-Mir-29-P1 Xbo-Mir-29-P1 Xtr-Mir-29-P1b-v1

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030729.1: 65233841-65233902 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P1b4)

Mir-29-P1b4 NC_030729.1: 65233841-65233902 [+] UCSC Ensembl
Mir-29-P2b4 NC_030729.1: 65235474-65235531 [+] UCSC Ensembl

Seed

AGCACCA

Precursor
(pre-Mir +30nt flank)

AACCAAGAGUCUACGUCACUUUUUCAGGAGGCUGGUUUCAUGUGGUGGUUUAGAUUUAGCUGACAAUGUCUAGCACCAUAUGAAAUCAGUGUCCUUAGAAGGAGAAUUCCUGCACUACCAAA

Get precursor sequence

Structure

        10        20          30        40        50        60 
AACCAAGAGUCUACGUCA       --|   G                 GU     UUUAGC 
                  CUUUUUC  AGGA GCUGGUUUCAUGUGGUG  UUAGA      U
                  GAGGAAG  UCCU UGACUAAAGUAUACCAC  GAUCU      G
AAACCAUCACGUCCUUAA       AU^   G                 --     GUAACA 
120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Star sequence

Xla-Mir-29-P1b4_5p* (predicted)

mirBase accession

None

Sequence

0- GCUGGUUUCAUGUGGUGGUUUAGA -24

Get sequence

Mature sequence

Xla-Mir-29-P1b4_3p

mirBase accession

None

Sequence

40- UAGCACCAUAUGAAAUCAGUGU -62

Get sequence