MirGeneDB 2.1

MirGeneDB ID

Mdo-Mir-29-P1b-v1

Family name MIR-29 (all species)
Seed AGCACCA
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-29b-1
Paralogues Mdo-Mir-29-P1b-v2  Mdo-Mir-29-P1d-v1  Mdo-Mir-29-P1d-v2  Mdo-Mir-29-P2b  Mdo-Mir-29-P2d 
Orthologues Aae-Mir-29-P1  Aca-Mir-29-P1b-v1  Aca-Mir-29-P1b-v2  Ami-Mir-29-P1b-v1  Ami-Mir-29-P1b-v2  Asu-Mir-29-P1  Bfl-Mir-29-P1  Bla-Mir-29-P1  Bta-Mir-29-P1b-v1  Bta-Mir-29-P1b-v2  Cbr-Mir-29-P1  Cel-Mir-29-P1  Cfa-Mir-29-P1b-v1  Cfa-Mir-29-P1b-v2  Cgi-Mir-29-P1  Cli-Mir-29-P1b-v1  Cli-Mir-29-P1b-v2  Cmi-Mir-29-P1b  Cpi-Mir-29-P1b-v1  Cpi-Mir-29-P1b-v2  Cpo-Mir-29-P1b-v1  Cpo-Mir-29-P1b-v2  Cte-Mir-29-P1  Dan-Mir-29-P1  Dme-Mir-29-P1  Dmo-Mir-29-P1  Dno-Mir-29-P1b-v1  Dno-Mir-29-P1b-v2  Dre-Mir-29-P1b1  Dsi-Mir-29-P1  Dya-Mir-29-P1  Esc-Mir-29-P1  Ete-Mir-29-P1b-v1  Ete-Mir-29-P1b-v2  Gga-Mir-29-P1b-v1  Gga-Mir-29-P1b-v2  Gja-Mir-29-P1b-v1  Gja-Mir-29-P1b-v2  Gmo-Mir-29-P1b1  Gmo-Mir-29-P1b2  Hme-Mir-29-P1  Hsa-Mir-29-P1b-v1  Hsa-Mir-29-P1b-v2  Lch-Mir-29-P1b  Loc-Mir-29-P1b-v1  Loc-Mir-29-P1b-v2  Mal-Mir-29-P1b1-v1  Mal-Mir-29-P1b1-v2  Mal-Mir-29-P1b2-v1  Mal-Mir-29-P1b2-v2  Mml-Mir-29-P1b-v1  Mml-Mir-29-P1b-v2  Mmu-Mir-29-P1b-v1  Mmu-Mir-29-P1b-v2  Mun-Mir-29-P1b  Npo-Mir-29-P1  Oan-Mir-29-P1b-v1  Oan-Mir-29-P1b-v2  Obi-Mir-29-P1  Ocu-Mir-29-P1b-v1  Ocu-Mir-29-P1b-v2  Ovu-Mir-29-P1  Pbv-Mir-29-P1b-v1  Pbv-Mir-29-P1b-v2  Pfl-Mir-29-P1  Pmi-Mir-29-P1  Rno-Mir-29-P1b-v1  Rno-Mir-29-P1b-v2  Sha-Mir-29-P1b-v1  Sha-Mir-29-P1b-v2  Sko-Mir-29-P1  Spt-Mir-29-P1b  Spu-Mir-29-P1  Sto-Mir-29-P1b  Tca-Mir-29-P1  Tgu-Mir-29-P1b-v1  Tgu-Mir-29-P1b-v2  Tni-Mir-29-P1b1  Tni-Mir-29-P1b2  Xbo-Mir-29-P1  Xla-Mir-29-P1b3  Xla-Mir-29-P1b4  Xtr-Mir-29-P1b-v1  Xtr-Mir-29-P1b-v2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(monDom5_add)
8: 190600829-190600892 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P1b-v1)
Mir-29-P2b 8: 190600410-190600469 [-] UCSC Ensembl
Mir-29-P1b-v1 8: 190600829-190600892 [-] UCSC Ensembl
Mir-29-P1b-v2 8: 190600830-190600891 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCAAGCAUGAUUUUAAAGCUUCUUCAGGAAGCUGGUUUCAUAUGGUGGUUUAGAUUUAACUACUGAGUGUCUAGCACCAUUUGAAAUCAGUGUUCUUGGAGGAGAAUGGCUACACCUCAAAAGG
Get precursor sequence
Structure
        10          20        30         40        50        60  
UCAAGCAUGAUUUUAAAG--            -|         U      GU     UUUAACU 
                    CUUCUUCAGGAA GCUGGUUUCA AUGGUG  UUAGA       \
                    GAGGAGGUUCUU UGACUAAAGU UACCAC  GAUCU       A
GGAAAACUCCACAUCGGUAA            G^         U      --     GUGAGUC 
  120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Star sequence

Mdo-Mir-29-P1b-v1_5p*

mirBase accessionMIMAT0026703
Sequence
0- GCUGGUUUCAUAUGGUGGUUUAGA -24
Get sequence
Proposed targets TargetScanVert: mdo-miR-29b-1-5p
Mature sequence

Mdo-Mir-29-P1b-v1_3p

mirBase accessionMIMAT0004163
Sequence
41- UAGCACCAUUUGAAAUCAGUGUU -64
Get sequence
Proposed targets TargetScanVert: mdo-miR-29b-3p