Mir-29-P1b-v1

MirGeneDB ID

Xtr-Mir-29-P1b-v1

Family name

MIR-29 (all species)

Seed

AGCACCA

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-29d

Paralogues

Xtr-Mir-29-P1b-v2 Xtr-Mir-29-P1d Xtr-Mir-29-P2b Xtr-Mir-29-P2d

Orthologues

Aae-Mir-29-P1 Aca-Mir-29-P1b-v1 Aca-Mir-29-P1b-v2 Ami-Mir-29-P1b-v1 Ami-Mir-29-P1b-v2 Asu-Mir-29-P1 Bfl-Mir-29-P1 Bla-Mir-29-P1 Bta-Mir-29-P1b-v1 Bta-Mir-29-P1b-v2 Cbr-Mir-29-P1 Cel-Mir-29-P1 Cfa-Mir-29-P1b-v1 Cfa-Mir-29-P1b-v2 Cgi-Mir-29-P1 Cli-Mir-29-P1b-v1 Cli-Mir-29-P1b-v2 Cmi-Mir-29-P1b Cpi-Mir-29-P1b-v1 Cpi-Mir-29-P1b-v2 Cpo-Mir-29-P1b-v1 Cpo-Mir-29-P1b-v2 Cte-Mir-29-P1 Dan-Mir-29-P1 Dme-Mir-29-P1 Dmo-Mir-29-P1 Dno-Mir-29-P1b-v1 Dno-Mir-29-P1b-v2 Dre-Mir-29-P1b1 Dsi-Mir-29-P1 Dya-Mir-29-P1 Esc-Mir-29-P1 Ete-Mir-29-P1b-v1 Ete-Mir-29-P1b-v2 Gga-Mir-29-P1b-v1 Gga-Mir-29-P1b-v2 Gja-Mir-29-P1b-v1 Gja-Mir-29-P1b-v2 Gmo-Mir-29-P1b1 Gmo-Mir-29-P1b2 Hme-Mir-29-P1 Hsa-Mir-29-P1b-v1 Hsa-Mir-29-P1b-v2 Lch-Mir-29-P1b Loc-Mir-29-P1b-v1 Loc-Mir-29-P1b-v2 Mal-Mir-29-P1b1-v1 Mal-Mir-29-P1b1-v2 Mal-Mir-29-P1b2-v1 Mal-Mir-29-P1b2-v2 Mdo-Mir-29-P1b-v1 Mdo-Mir-29-P1b-v2 Mml-Mir-29-P1b-v1 Mml-Mir-29-P1b-v2 Mmu-Mir-29-P1b-v1 Mmu-Mir-29-P1b-v2 Mun-Mir-29-P1b Npo-Mir-29-P1 Oan-Mir-29-P1b-v1 Oan-Mir-29-P1b-v2 Obi-Mir-29-P1 Ocu-Mir-29-P1b-v1 Ocu-Mir-29-P1b-v2 Ovu-Mir-29-P1 Pbv-Mir-29-P1b-v1 Pbv-Mir-29-P1b-v2 Pfl-Mir-29-P1 Pmi-Mir-29-P1 Rno-Mir-29-P1b-v1 Rno-Mir-29-P1b-v2 Sha-Mir-29-P1b-v1 Sha-Mir-29-P1b-v2 Sko-Mir-29-P1 Spt-Mir-29-P1b Spu-Mir-29-P1 Sto-Mir-29-P1b Tca-Mir-29-P1 Tgu-Mir-29-P1b-v1 Tgu-Mir-29-P1b-v2 Tni-Mir-29-P1b1 Tni-Mir-29-P1b2 Xbo-Mir-29-P1 Xla-Mir-29-P1b3 Xla-Mir-29-P1b4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(xenTro9_add)

chr3: 75127548-75127611 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P1b-v1)

Mir-29-P2b chr3: 75124890-75124947 [-] UCSC Ensembl
Mir-29-P1b-v1 chr3: 75127548-75127611 [-] UCSC Ensembl
Mir-29-P1b-v2 chr3: 75127549-75127610 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AACUAAGAGUGAAAGUCACUUUUUCAGGAGGCUGGUUUCAUGUGGUGGUUUAGAUUUAACUGCACAAUGUCUAGCACCAUAUGAAAUCAGUGUCCUUAGAAGGAGAAUUCCUGCACUACCAAAC

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Structure

        10         20          30        40        50        60  
AACUAAGAGUGAAAGUCA-       --|   G                 GU     UUUAACU 
                   CUUUUUC  AGGA GCUGGUUUCAUGUGGUG  UUAGA       \
                   GAGGAAG  UCCU UGACUAAAGUAUACCAC  GAUCU       G
CAAACCAUCACGUCCUUAA       AU^   G                 --     GUAACAC 
  120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Em	Em	Em	Em	He

Star sequence

Xtr-Mir-29-P1b-v1_5p* (predicted)

mirBase accession

None

Sequence

0- GCUGGUUUCAUGUGGUGGUUUAGA -24

Get sequence

Mature sequence

Xtr-Mir-29-P1b-v1_3p

mirBase accession

MIMAT0003572

Sequence

41- UAGCACCAUAUGAAAUCAGUGUC -64

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Proposed targets

TargetScanVert: xtr-miR-29d