MirGeneDB ID | Xtr-Mir-29-P2d |
Family name |
MIR-29 (all species) |
Species |
Tropical clawed frog (Xenopus tropicalis) |
MiRBase ID |
xtr-mir-29c
|
Paralogues |
Xtr-Mir-29-P1b-v1
Xtr-Mir-29-P1d
Xtr-Mir-29-P2b
|
Orthologues |
Aca-Mir-29-P2d
Agr-Mir-29-P2
Ami-Mir-29-P2d
Asu-Mir-29-P2
Bfl-Mir-29-P2
Bla-Mir-29-P2
Bta-Mir-29-P2d7
Bta-Mir-29-P2d8
Cbr-Mir-29-P2
Cel-Mir-29-P2
Cfa-Mir-29-P2d7
Cfa-Mir-29-P2d8
Cja-Mir-29-P2d
Cli-Mir-29-P2d
Cmi-Mir-29-P2d
Cpi-Mir-29-P2d
Cpo-Mir-29-P2d
Cte-Mir-29-P2
Dgr-Mir-29-P2
Dma-Mir-29-P2
Dno-Mir-29-P2d
Dpu-Mir-29-P2
Dre-Mir-29-P2d2
Eba-Mir-29-P2
Eca-Mir-29-P2d7
Eca-Mir-29-P2d8
Esc-Mir-29-P2
Ete-Mir-29-P2d
Gga-Mir-29-P2d
Gja-Mir-29-P2d
Gmo-Mir-29-P2d1
Gmo-Mir-29-P2d2
Gsp-Mir-29
Hru-Mir-29-P2
Hsa-Mir-29-P2d
Laf-Mir-29-P2d
Lch-Mir-29-P2d
Lgi-Mir-29-P2
Lhy-Mir-29-P2
Llo-Mir-29-P2
Loc-Mir-29-P2d-v1
Mal-Mir-29-P2d1
Mal-Mir-29-P2d2
Mdo-Mir-29-P2d
Mgi-Mir-29-P2
Mml-Mir-29-P2d
Mmr-Mir-29-P2d
Mmu-Mir-29-P2d
Mom-Mir-29-P2
Mun-Mir-29-P2d
Neu-Mir-29-P2d
Npo-Mir-29-P2
Oan-Mir-29-P2d
Obi-Mir-29-P2
Ocu-Mir-29-P2d
Ofu-Mir-29-P2
Ovu-Mir-29-P2
Pab-Mir-29-P2d
Pau-Mir-29-P2
Pbv-Mir-29-P2d
Pcr-Mir-29-P2
Pdu-Mir-29-P2
Pfl-Mir-29-P2
Pmi-Mir-29-P2
Pve-Mir-29-P2
Rno-Mir-29-P2d5
Rno-Mir-29-P2d6
Rph-Mir-29-P2
Sha-Mir-29-P2d
Sko-Mir-29-P2
Sme-Mir-29-o2
Spt-Mir-29-P2d
Spu-Mir-29-P2
Sto-Mir-29-P2d
Tgu-Mir-29-P2d
Tni-Mir-29-P2d1
Tni-Mir-29-P2d2
War-Mir-29-P2
Xbo-Mir-29-P2
Xla-Mir-29-P2d3
Xla-Mir-29-P2d4
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (xenTro9_add) |
chr2: 48076550-48076610 [+]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Mir-29-P2d) |
Mir-29-P1d
chr2: 48073409-48073473 [+]
UCSC
Ensembl
Mir-29-P2d
chr2: 48076550-48076610 [+]
UCSC
Ensembl
|
Seed |
AGCACCA |
Precursor (pre-Mir +30nt flank) |
UAAUAGAACAACAGUCCCUUACACAGGAUGACCGAUCUCUCUUGGUGUUCAGAGGCUCAGGUCUUCAUCUAGCACCAUUUGAAAUCGGUUAUAAUGUAAGGUGAAUGGCAACAAAGCUGCA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UAAUAGAACAACAGUCC----| CAGG C UCU C GGCUCA
CUUACA AUGACCGAU UC UGGUGUU AGA G
GAAUGU UAUUGGCUA AG ACCACGA UCU G
ACGUCGAAACAACGGUAAGUG^ AA-- A UUU - ACUUCU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha cut -2 on the 5p arm. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Xtr-Mir-29-P2d_5p* |
mirBase accession | MIMAT0003676 |
Sequence |
0- ACCGAUCUCUCUUGGUGUUCAGA -23
Get sequence
|
Proposed targets |
TargetScanVert: xtr-miR-29c-5p
|
Mature sequence |
Xtr-Mir-29-P2d_3p |
mirBase accession | MIMAT0003677 |
Sequence |
39- UAGCACCAUUUGAAAUCGGUUA -61
Get sequence
|
Proposed targets |
TargetScanVert: xtr-miR-29c-3p
|