MirGeneDB ID | Dre-Mir-29-P2d2 |
Family name |
MIR-29 (all species) |
Seed |
AGCACCA |
Species |
Zebrafish (Danio rerio) |
MiRBase ID |
|
Paralogues |
Dre-Mir-29-P1b1
Dre-Mir-29-P1d1
Dre-Mir-29-P1d2
Dre-Mir-29-P2b1
|
Orthologues |
Aca-Mir-29-P2d
Ami-Mir-29-P2d
Asu-Mir-29-P2
Bfl-Mir-29-P2
Bla-Mir-29-P2
Bta-Mir-29-P2d2
Cbr-Mir-29-P2
Cel-Mir-29-P2
Cgi-Mir-29-P2
Cin-Mir-29-P2
Cli-Mir-29-P2d
Cmi-Mir-29-P2d
Cpi-Mir-29-P2d
Cpo-Mir-29-P2d
Csc-Mir-29-P2
Cte-Mir-29-P2
Dno-Mir-29-P2d
Esc-Mir-29-P2
Ete-Mir-29-P2d
Gga-Mir-29-P2d
Gja-Mir-29-P2d
Gmo-Mir-29-P2d2
Hsa-Mir-29-P2d
Isc-Mir-29-P2
Lch-Mir-29-P2d
Lgi-Mir-29-P2
Loc-Mir-29-P2d-v1
Loc-Mir-29-P2d-v2
Mal-Mir-29-P2d2
Mdo-Mir-29-P2d
Mml-Mir-29-P2d
Mmu-Mir-29-P2d
Mun-Mir-29-P2d
Npo-Mir-29-P2
Oan-Mir-29-P2d
Obi-Mir-29-P2
Ocu-Mir-29-P2d
Ovu-Mir-29-P2
Pbv-Mir-29-P2d
Pfl-Mir-29-P2
Pmi-Mir-29-P2
Sha-Mir-29-P2d
Sko-Mir-29-P2
Spt-Mir-29-P2d
Spu-Mir-29-P2
Sto-Mir-29-P2d
Tgu-Mir-29-P2d
Tni-Mir-29-P2d2
Xbo-Mir-29-P2
Xtr-Mir-29-P2d
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Bilateria
|
Genome context (danRer11) |
chr23: 32439975-32440034 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUCAAGACCUGUGUCCUCUACCCAAGGUUGACCGAUUUCUUUUGGUGUUCAGAGUCUUUUGGGGUUUCUAGCACCAUUUGAAAUCGGUUACAAUGAAGGACCAAUGACGACGAUGGAUUU
Get precursor sequence
|
Structure | 10 20 30 40 50
UUCAAGACCUGUGUCCUCUACCCAA ---------| UUU C GUCUUU
GGUU GACCGAUUUC UGGUGUU AGA \
CCAG UUGGCUAAAG ACCACGA UCU U
UUUAGGUAGCAGCAGUAA------- GAAGUAACA^ UUU - UUGGGG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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Star sequence |
Dre-Mir-29-P2d2_5p* |
mirBase accession | None |
Sequence |
0- ACCGAUUUCUUUUGGUGUUCAGA -23
Get sequence
|
Mature sequence |
Dre-Mir-29-P2d2_3p |
mirBase accession | None |
Sequence |
38- UAGCACCAUUUGAAAUCGGUUA -60
Get sequence
|