MirGeneDB ID | Hsa-Mir-29-P2d |
Family name |
MIR-29 (all species) |
Species |
Human (Homo sapiens) |
MiRBase ID |
hsa-mir-29c
|
Paralogues |
Hsa-Mir-29-P1b-v1
Hsa-Mir-29-P1d-v1
Hsa-Mir-29-P2b
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Orthologues |
Aca-Mir-29-P2d
Agr-Mir-29-P2
Ami-Mir-29-P2d
Asu-Mir-29-P2
Bfl-Mir-29-P2
Bla-Mir-29-P2
Bta-Mir-29-P2d7
Bta-Mir-29-P2d8
Cbr-Mir-29-P2
Cel-Mir-29-P2
Cfa-Mir-29-P2d7
Cfa-Mir-29-P2d8
Cja-Mir-29-P2d
Cli-Mir-29-P2d
Cmi-Mir-29-P2d
Cpi-Mir-29-P2d
Cpo-Mir-29-P2d
Cte-Mir-29-P2
Dgr-Mir-29-P2
Dma-Mir-29-P2
Dno-Mir-29-P2d
Dpu-Mir-29-P2
Dre-Mir-29-P2d2
Eba-Mir-29-P2
Eca-Mir-29-P2d7
Eca-Mir-29-P2d8
Esc-Mir-29-P2
Ete-Mir-29-P2d
Gga-Mir-29-P2d
Gja-Mir-29-P2d
Gmo-Mir-29-P2d1
Gmo-Mir-29-P2d2
Gsp-Mir-29
Hru-Mir-29-P2
Laf-Mir-29-P2d
Lch-Mir-29-P2d
Lgi-Mir-29-P2
Lhy-Mir-29-P2
Llo-Mir-29-P2
Loc-Mir-29-P2d-v1
Mal-Mir-29-P2d1
Mal-Mir-29-P2d2
Mdo-Mir-29-P2d
Mgi-Mir-29-P2
Mml-Mir-29-P2d
Mmr-Mir-29-P2d
Mmu-Mir-29-P2d
Mom-Mir-29-P2
Mun-Mir-29-P2d
Neu-Mir-29-P2d
Npo-Mir-29-P2
Oan-Mir-29-P2d
Obi-Mir-29-P2
Ocu-Mir-29-P2d
Ofu-Mir-29-P2
Ovu-Mir-29-P2
Pab-Mir-29-P2d
Pau-Mir-29-P2
Pbv-Mir-29-P2d
Pcr-Mir-29-P2
Pdu-Mir-29-P2
Pfl-Mir-29-P2
Pmi-Mir-29-P2
Pve-Mir-29-P2
Rno-Mir-29-P2d5
Rno-Mir-29-P2d6
Rph-Mir-29-P2
Sha-Mir-29-P2d
Sko-Mir-29-P2
Sme-Mir-29-o2
Spt-Mir-29-P2d
Spu-Mir-29-P2
Sto-Mir-29-P2d
Tgu-Mir-29-P2d
Tni-Mir-29-P2d1
Tni-Mir-29-P2d2
War-Mir-29-P2
Xbo-Mir-29-P2
Xla-Mir-29-P2d3
Xla-Mir-29-P2d4
Xtr-Mir-29-P2d
|
Node of Origin (locus) |
Gnathostomata
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Node of Origin (family) |
Bilateria
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Genome context (hg38) |
chr1: 207801865-207801922 [-]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Mir-29-P2d) |
Mir-29-P2d
chr1: 207801865-207801922 [-]
UCSC
Ensembl
Mir-29-P1d-v1
chr1: 207802450-207802514 [-]
UCSC
Ensembl
Mir-29-P1d-v2
chr1: 207802451-207802513 [-]
UCSC
Ensembl
|
Seed |
AGCACCA |
Precursor (pre-Mir +30nt flank) |
GCACCACUGGCCCAUCUCUUACACAGGCUGACCGAUUUCUCCUGGUGUUCAGAGUCUGUUUUUGUCUAGCACCAUUUGAAAUCGGUUAUGAUGUAGGGGGAAAAGCAGCAGCCUCGAA
Get precursor sequence
|
Structure | 10 20 30 40 50
GCACCACUGGCCCAUCU---- -| GGC UCC C GUCUG
CUUACA CA UGACCGAUUUC UGGUGUU AGA \
GGAUGU GU AUUGGCUAAAG ACCACGA UCU U
AAGCUCCGACGACGAAAAGGG A^ --- UUU - GUUUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
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3' NTU |
No
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Motifs | CNNC at 3p(+17) |
Tissue expression
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Dc |
Dc |
Dr |
Dr |
Xp |
Xp |
Bl |
Br |
Br |
Ce |
Ce |
Co |
Fo |
He |
Ki |
Le |
Li |
Li |
Lu |
Pa |
Pl |
Pl |
Sk |
Sk |
Sk |
Sm |
Sp |
Sp |
St |
Te |
Th |
Ut |
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Star sequence |
Hsa-Mir-29-P2d_5p* |
mirBase accession | MIMAT0004673 |
Sequence |
0- ACCGAUUUCUCCUGGUGUUCAGA -23
Get sequence
|
Proposed targets |
microrna.org: MIMAT0004673
TargetScanVert: hsa-miR-29c-5p
TargetMiner: hsa-miR-29c-5p
miRDB: MIMAT0004673
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Mature sequence |
Hsa-Mir-29-P2d_3p |
mirBase accession | MIMAT0000681 |
Sequence |
36- UAGCACCAUUUGAAAUCGGUUA -58
Get sequence
|
Proposed targets |
microrna.org: MIMAT0000681
TargetScanVert: hsa-miR-29c-3p
TargetMiner: hsa-miR-29c-3p
miRDB: MIMAT0000681
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