MirGeneDB 2.1
MirGeneDB ID

Ami-Mir-29-P2d

Family name MIR-29 (all species)
Seed AGCACCA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-29a-2
Paralogues Ami-Mir-29-P1b-v1  Ami-Mir-29-P1b-v2  Ami-Mir-29-P1d-v1  Ami-Mir-29-P1d-v2  Ami-Mir-29-P2b 
Orthologues Aca-Mir-29-P2d  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Bta-Mir-29-P2d1  Bta-Mir-29-P2d2  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cfa-Mir-29-P2d7  Cfa-Mir-29-P2d8  Cgi-Mir-29-P2  Cin-Mir-29-P2  Cli-Mir-29-P2d  Cmi-Mir-29-P2d  Cpi-Mir-29-P2d  Cpo-Mir-29-P2d  Csc-Mir-29-P2  Cte-Mir-29-P2  Dno-Mir-29-P2d  Dre-Mir-29-P2d2  Esc-Mir-29-P2  Ete-Mir-29-P2d  Gga-Mir-29-P2d  Gja-Mir-29-P2d  Gmo-Mir-29-P2d1  Gmo-Mir-29-P2d2  Hsa-Mir-29-P2d  Isc-Mir-29-P2  Lch-Mir-29-P2d  Lgi-Mir-29-P2  Loc-Mir-29-P2d-v1  Loc-Mir-29-P2d-v2  Mal-Mir-29-P2d1  Mal-Mir-29-P2d2  Mdo-Mir-29-P2d  Mml-Mir-29-P2d  Mmu-Mir-29-P2d  Mun-Mir-29-P2d  Npo-Mir-29-P2  Oan-Mir-29-P2d  Obi-Mir-29-P2  Ocu-Mir-29-P2d  Ovu-Mir-29-P2  Pbv-Mir-29-P2d  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Rno-Mir-29-P2d5  Rno-Mir-29-P2d6  Sha-Mir-29-P2d  Sko-Mir-29-P2  Spt-Mir-29-P2d  Spu-Mir-29-P2  Sto-Mir-29-P2d  Tgu-Mir-29-P2d  Tni-Mir-29-P2d1  Tni-Mir-29-P2d2  Xbo-Mir-29-P2  Xla-Mir-29-P2d3  Xla-Mir-29-P2d4  Xtr-Mir-29-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017713418.1: 1061842-1061901 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-29-P2d)		 Mir-29-P1d-v1 NW_017713418.1: 1060963-1061027 [+] UCSC
Mir-29-P1d-v2 NW_017713418.1: 1060964-1061026 [+] UCSC
Mir-29-P2d NW_017713418.1: 1061842-1061901 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GAACUGGAAAAAAGUCUCUUACACAGGCUGACCGAUUUCUCUUGGUGUUCAGAGUCUCAGUGUUUGUCUAGCACCAUUUGAAAUCGGUUAUGAUGUAGGGGGAAAAGCAACAGUAAUUGG
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Structure
        10            20         30        40        50          
GAACUGGAAAAAAGUCU----      -| GGC           UCU       C   GUCUCA 
                     CUUACA CA   UGACCGAUUUC   UGGUGUU AGA      \
                     GGAUGU GU   AUUGGCUAAAG   ACCACGA UCU      G
GGUUAAUGACAACGAAAAGGG      A^ ---           UUU       -   GUUUGU 
.       110       100           90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Ami-Mir-29-P2d_5p*
mirBase accessionMIMAT0038073
Sequence 
0- ACCGAUUUCUCUUGGUGUUCAGA -23
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Mature sequence

Ami-Mir-29-P2d_3p
mirBase accessionMIMAT0038072
Sequence 
38- UAGCACCAUUUGAAAUCGGUUA -60
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